Literature DB >> 23620349

Flavobacterium aquaticum sp. nov., a member of the Bacteroidetes isolated from a freshwater reservoir.

Siwon Lee1, Jungnam Lee, Tae-Young Ahn.   

Abstract

A novel bacterial strain, designated ARSA-111(T), was isolated from a freshwater reservoir in Cheonan, Korea. Phylogenetic analysis based on 16S rRNA gene sequences suggested that the isolate belonged to the genus Flavobacterium of phylum Bacteroidetes. The 16S rRNA gene sequence of strain ARSA-111(T) showed a high degree of sequence similarity to those of Flavobacteium cheonanense KACC 14972(T) (97.3%), F. aquatile JCM 20475(T) (97.1%), and other type strains of the genus Flavobacterium (< 97.0%). The phylogenetic tree and network analysis (i.e. median-joining) based on 16S rRNA gene sequences showed that strain ARSA-111(T) is most closely related to F. aquatile JCM 20475(T). DNA-DNA hybridization experiment revealed 70% of genomic relatedness among strain ARSA-111(T), F. aquatile JCM 20475(T) and F. cheonanense KACC 14972(T). The isolate had iso-C15:1, iso-C15:0, and iso-C15:0 3-OH as predominant cellular fatty acids and MK-6 as a predominant menaquinone. The genomic DNA G+C content of the isolate was 35.6 mol%. On the basis of these data, strain ARSA-111(T) is considered to be a novel species of the genus Flavobacterium, for which the name Flavobacterium aquaticum sp. nov. is proposed. The type strain is strain ARSA-111(T) (=KACC 14973(T) =KCTC 23185(T) = JCM 17070(T)).

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Year:  2013        PMID: 23620349     DOI: 10.1007/s12275-013-2293-8

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  14 in total

1.  Phylogenetic analysis of Bacillus subtilis and related taxa based on partial gyrA gene sequences.

Authors:  J Chun; K S Bae
Journal:  Antonie Van Leeuwenhoek       Date:  2000-08       Impact factor: 2.271

2.  Median-joining networks for inferring intraspecific phylogenies.

Authors:  H J Bandelt; P Forster; A Röhl
Journal:  Mol Biol Evol       Date:  1999-01       Impact factor: 16.240

3.  Flavobacterium dankookense sp. nov., isolated from a freshwater reservoir, and emended descriptions of Flavobacterium cheonanense, F. chungnamense, F. koreense and F. aquatile.

Authors:  Siwon Lee; Hang-Yeon Weon; Kyudong Han; Tae-Young Ahn
Journal:  Int J Syst Evol Microbiol       Date:  2011-11-18       Impact factor: 2.747

4.  Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family.

Authors:  Jean-Francois Bernardet; Yasuyoshi Nakagawa; Barry Holmes
Journal:  Int J Syst Evol Microbiol       Date:  2002-05       Impact factor: 2.747

5.  EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences.

Authors:  Jongsik Chun; Jae-Hak Lee; Yoonyoung Jung; Myungjin Kim; Seil Kim; Byung Kwon Kim; Young-Woon Lim
Journal:  Int J Syst Evol Microbiol       Date:  2007-10       Impact factor: 2.747

6.  Flavobacterium croceum sp. nov., isolated from activated sludge.

Authors:  Minjeong Park; Shipeng Lu; Seung Hyun Ryu; Bok Sil Chung; Woojun Park; Chang-Jin Kim; Che Ok Jeon
Journal:  Int J Syst Evol Microbiol       Date:  2006-10       Impact factor: 2.747

7.  Gliding motility in some non-spreading flexibacteria.

Authors:  L B Perry
Journal:  J Appl Bacteriol       Date:  1973-06

8.  Flavobacterium koreense sp. nov., Flavobacterium chungnamense sp. nov., and Flavobacterium cheonanense sp. nov., isolated from a freshwater reservoir.

Authors:  Siwon Lee; Hang-Yeon Weon; Soo-Jin Kim; Tae-Young Ahn
Journal:  J Microbiol       Date:  2011-06-30       Impact factor: 3.422

9.  Flavobacterium aquidurense sp. nov. and Flavobacterium hercynium sp. nov., from a hard-water creek.

Authors:  Sylvie Cousin; Orsola Päuker; Erko Stackebrandt
Journal:  Int J Syst Evol Microbiol       Date:  2007-02       Impact factor: 2.747

10.  Flavobacterium macrobrachii sp. nov., isolated from a freshwater shrimp culture pond.

Authors:  Shih-Yi Sheu; Tzu-Fang Chiu; Chiu-Chung Young; A B Arun; Wen-Ming Chen
Journal:  Int J Syst Evol Microbiol       Date:  2010-07-02       Impact factor: 2.747

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