Literature DB >> 23617785

Preservation of RNA and DNA from mammal samples under field conditions.

Miguel Camacho-Sanchez1, Pablo Burraco, Ivan Gomez-Mestre, Jennifer A Leonard.   

Abstract

Ecological and conservation genetics require sampling of organisms in the wild. Appropriate preservation of the collected samples, usually by cryostorage, is key to the quality of the genetic data obtained. Nevertheless, cryopreservation in the field to ensure RNA and DNA stability is not always possible. We compared several nucleic acid preservation solutions appropriate for field sampling and tested them on rat (Rattus rattus) blood, ear and tail tip, liver, brain and muscle. We compared the efficacy of a nucleic acid preservation (NAP) buffer for DNA preservation against 95% ethanol and Longmire buffer, and for RNA preservation against RNAlater (Qiagen) and Longmire buffer, under simulated field conditions. For DNA, the NAP buffer was slightly better than cryopreservation or 95% ethanol, but high molecular weight DNA was preserved in all conditions. The NAP buffer preserved RNA as well as RNAlater. Liver yielded the best RNA and DNA quantity and quality; thus, liver should be the tissue preferentially collected from euthanized animals. We also show that DNA persists in nonpreserved muscle tissue for at least 1 week at ambient temperature, although degradation is noticeable in a matter of hours. When cryopreservation is not possible, the NAP buffer is an economical alternative for RNA preservation at ambient temperature for at least 2 months and DNA preservation for at least 10 months.
© 2013 John Wiley & Sons Ltd.

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Year:  2013        PMID: 23617785     DOI: 10.1111/1755-0998.12108

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  33 in total

1.  Optimizing RNA Extraction of Renal Papilla Biopsy Tissue in Kidney Stone Formers: A New Methodology for Genomic Study.

Authors:  Kazumi Taguchi; Manint Usawachintachit; Shuzo Hamamoto; Rei Unno; David T Tzou; Benjamin A Sherer; Yongmei Wang; Atsushi Okada; Marshall L Stoller; Takahiro Yasui; Thomas Chi
Journal:  J Endourol       Date:  2017-08-11       Impact factor: 2.942

2.  Improving the standards for gut microbiome analysis of fecal samples: insights from the field biology of Japanese macaques on Yakushima Island.

Authors:  Takashi Hayakawa; Akiko Sawada; Akifumi S Tanabe; Shinji Fukuda; Takushi Kishida; Yosuke Kurihara; Kei Matsushima; Jie Liu; Etienne-Francois Akomo-Okoue; Waleska Gravena; Makoto Kashima; Mariko Suzuki; Kohmei Kadowaki; Takafumi Suzumura; Eiji Inoue; Hideki Sugiura; Goro Hanya; Kiyokazu Agata
Journal:  Primates       Date:  2018-06-25       Impact factor: 2.163

3.  Evaluation of the Effects of Different Sample Collection Strategies on DNA/RNA Co-Analysis of Forensic Stains.

Authors:  Daniela Lacerenza; Giorgio Caudullo; Elena Chierto; Serena Aneli; Giancarlo Di Vella; Marco Barberis; Samuele Voyron; Paola Berchialla; Carlo Robino
Journal:  Genes (Basel)       Date:  2022-05-30       Impact factor: 4.141

4.  Nonrandom RNAseq gene expression associated with RNAlater and flash freezing storage methods.

Authors:  Courtney N Passow; Thomas J Y Kono; Bethany A Stahl; James B Jaggard; Alex C Keene; Suzanne E McGaugh
Journal:  Mol Ecol Resour       Date:  2018-12-21       Impact factor: 7.090

5.  High rates of evolution preceded shifts to sex-biased gene expression in Leucadendron, the most sexually dimorphic angiosperms.

Authors:  Mathias Scharmann; Anthony G Rebelo; John R Pannell
Journal:  Elife       Date:  2021-11-02       Impact factor: 8.140

6.  No filters, no fridges: a method for preservation of water samples for eDNA analysis.

Authors:  Kelly E Williams; Kathryn P Huyvaert; Antoinette J Piaggio
Journal:  BMC Res Notes       Date:  2016-06-08

7.  Greater than X kb: a quantitative assessment of preservation conditions on genomic DNA quality, and a proposed standard for genome-quality DNA.

Authors:  Daniel G Mulcahy; Kenneth S Macdonald; Seán G Brady; Christopher Meyer; Katharine B Barker; Jonathan Coddington
Journal:  PeerJ       Date:  2016-10-11       Impact factor: 2.984

8.  The maintenance of microbial community in human fecal samples by a cost effective preservation buffer.

Authors:  Chongming Wu; Tianda Chen; Wenyi Xu; Tingting Zhang; Yuwei Pei; Yanan Yang; Fang Zhang; Hao Guo; Qingshi Wang; Li Wang; Bowen Zhao
Journal:  Sci Rep       Date:  2021-06-29       Impact factor: 4.379

9.  Different Rhizospheric pH Conditions Affect Nutrient Accumulations in Rice under Salinity Stress.

Authors:  Mami Nampei; Kamonthip Jiadkong; Sumana Chuamnakthong; Thanakorn Wangsawang; Tanee Sreewongchai; Akihiro Ueda
Journal:  Plants (Basel)       Date:  2021-06-25

10.  A cure for the blues: opsin duplication and subfunctionalization for short-wavelength sensitivity in jewel beetles (Coleoptera: Buprestidae).

Authors:  Nathan P Lord; Rebecca L Plimpton; Camilla R Sharkey; Anton Suvorov; Jonathan P Lelito; Barry M Willardson; Seth M Bybee
Journal:  BMC Evol Biol       Date:  2016-05-18       Impact factor: 3.260

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