Literature DB >> 23612685

Biomolecular hydration dynamics: a jump model perspective.

Aoife C Fogarty1, Elise Duboué-Dijon, Fabio Sterpone, James T Hynes, Damien Laage.   

Abstract

The dynamics of water molecules within the hydration shell surrounding a biomolecule can have a crucial influence on its biochemical function. Characterizing their properties and the extent to which they differ from those of bulk water have thus been long-standing questions. Following a tutorial approach, we review the recent advances in this field and the different approaches which have probed the dynamical perturbation experienced by water in the vicinity of proteins or DNA. We discuss the molecular factors causing this perturbation, and describe how they change with temperature. We finally present more biologically relevant cases beyond the dilute aqueous situation. A special focus is on the jump model for water reorientation and hydrogen bond rearrangement.

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Year:  2013        PMID: 23612685     DOI: 10.1039/c3cs60091b

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  20 in total

1.  Identifying hydrophobic protein patches to inform protein interaction interfaces.

Authors:  Nicholas B Rego; Erte Xi; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-09       Impact factor: 11.205

2.  Hydration Structure and Dynamics of Inhibitor-Bound HIV-1 Protease.

Authors:  Florian Leidner; Nese Kurt Yilmaz; Janet Paulsen; Yves A Muller; Celia A Schiffer
Journal:  J Chem Theory Comput       Date:  2018-04-18       Impact factor: 6.006

3.  Protein Solvent Shell Structure Provides Rapid Analysis of Hydration Dynamics.

Authors:  Jayangika N Dahanayake; Elaheh Shahryari; Kirsten M Roberts; Micah E Heikes; Chandana Kasireddy; Katie R Mitchell-Koch
Journal:  J Chem Inf Model       Date:  2019-03-22       Impact factor: 4.956

4.  An efficient algorithm calculating common solvent accessible volume.

Authors:  In Jung Kim; Hyuntae Na
Journal:  PLoS One       Date:  2022-03-21       Impact factor: 3.240

Review 5.  A Critical Review on the Sensing, Control, and Manipulation of Single Molecules on Optofluidic Devices.

Authors:  Mahmudur Rahman; Kazi Rafiqul Islam; Md Rashedul Islam; Md Jahirul Islam; Md Rejvi Kaysir; Masuma Akter; Md Arifur Rahman; S M Mahfuz Alam
Journal:  Micromachines (Basel)       Date:  2022-06-18       Impact factor: 3.523

6.  Anomalously Rapid Hydration Water Diffusion Dynamics Near DNA Surfaces.

Authors:  John M Franck; Yuan Ding; Katherine Stone; Peter Z Qin; Songi Han
Journal:  J Am Chem Soc       Date:  2015-09-10       Impact factor: 15.419

Review 7.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

8.  Role of Internal Water on Protein Thermal Stability: The Case of Homologous G Domains.

Authors:  Obaidur Rahaman; Maria Kalimeri; Simone Melchionna; Jérôme Hénin; Fabio Sterpone
Journal:  J Phys Chem B       Date:  2014-10-15       Impact factor: 2.991

9.  A novel hypothesis for atherosclerosis as a cholesterol sulfate deficiency syndrome.

Authors:  Stephanie Seneff; Robert M Davidson; Ann Lauritzen; Anthony Samsel; Glyn Wainwright
Journal:  Theor Biol Med Model       Date:  2015-05-27       Impact factor: 2.432

10.  Heterogeneous Hydration of p53/MDM2 Complex.

Authors:  Zuojun Guo; Bo Li; Joachim Dzubiella; Li-Tien Cheng; J Andrew McCammon; Jianwei Che
Journal:  J Chem Theory Comput       Date:  2014-01-31       Impact factor: 6.006

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