Literature DB >> 23602809

Conformational flexibility and structural dynamics in GPCR-mediated G protein activation: a perspective.

Anita M Preininger1, Jens Meiler, Heidi E Hamm.   

Abstract

Structure and dynamics of G proteins and their cognate receptors, both alone and in complex, are becoming increasingly accessible to experimental techniques. Understanding the conformational changes and timelines that govern these changes can lead to new insights into the processes of ligand binding and associated G protein activation. Experimental systems may involve the use of, or otherwise stabilize, non-native environments. This can complicate our understanding of structural and dynamic features of processes such as the ionic lock, tryptophan toggle, and G protein flexibility. While elements in the receptor's transmembrane helices and the C-terminal α5 helix of Gα undergo well-defined structural changes, regions subject to conformational flexibility may be important in fine-tuning the interactions between activated receptors and G proteins. The pairing of computational and experimental approaches will continue to provide powerful tools to probe the conformation and dynamics of receptor-mediated G protein activation.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23602809      PMCID: PMC3686903          DOI: 10.1016/j.jmb.2013.04.011

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  89 in total

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Authors:  X P Chen; W Yang; Y Fan; J S Luo; K Hong; Z Wang; J F Yan; X Chen; J X Lu; J L Benovic; N M Zhou
Journal:  Br J Pharmacol       Date:  2010-12       Impact factor: 8.739

2.  Concerted interconversion between ionic lock substates of the beta(2) adrenergic receptor revealed by microsecond timescale molecular dynamics.

Authors:  Tod D Romo; Alan Grossfield; Michael C Pitman
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

3.  The membrane complex between transducin and dark-state rhodopsin exhibits large-amplitude interface dynamics on the sub-microsecond timescale: insights from all-atom MD simulations.

Authors:  Nikolaos G Sgourakis; Angel E Garcia
Journal:  J Mol Biol       Date:  2010-02-23       Impact factor: 5.469

4.  A lipid pathway for ligand binding is necessary for a cannabinoid G protein-coupled receptor.

Authors:  Dow P Hurst; Alan Grossfield; Diane L Lynch; Scott Feller; Tod D Romo; Klaus Gawrisch; Michael C Pitman; Patricia H Reggio
Journal:  J Biol Chem       Date:  2010-03-10       Impact factor: 5.157

5.  Conserved binding mode of human beta2 adrenergic receptor inverse agonists and antagonist revealed by X-ray crystallography.

Authors:  Daniel Wacker; Gustavo Fenalti; Monica A Brown; Vsevolod Katritch; Ruben Abagyan; Vadim Cherezov; Raymond C Stevens
Journal:  J Am Chem Soc       Date:  2010-08-25       Impact factor: 15.419

6.  Structure of a nanobody-stabilized active state of the β(2) adrenoceptor.

Authors:  Søren G F Rasmussen; Hee-Jung Choi; Juan Jose Fung; Els Pardon; Paola Casarosa; Pil Seok Chae; Brian T Devree; Daniel M Rosenbaum; Foon Sun Thian; Tong Sun Kobilka; Andreas Schnapp; Ingo Konetzki; Roger K Sunahara; Samuel H Gellman; Alexander Pautsch; Jan Steyaert; William I Weis; Brian K Kobilka
Journal:  Nature       Date:  2011-01-13       Impact factor: 49.962

7.  Structural evidence for a sequential release mechanism for activation of heterotrimeric G proteins.

Authors:  Neeraj Kapoor; Santosh T Menon; Radha Chauhan; Pallavi Sachdev; Thomas P Sakmar
Journal:  J Mol Biol       Date:  2009-08-22       Impact factor: 5.469

8.  Helix dipole movement and conformational variability contribute to allosteric GDP release in Galphai subunits.

Authors:  Anita M Preininger; Michael A Funk; William M Oldham; Scott M Meier; Christopher A Johnston; Suraj Adhikary; Adam J Kimple; David P Siderovski; Heidi E Hamm; Tina M Iverson
Journal:  Biochemistry       Date:  2009-03-31       Impact factor: 3.162

9.  Impact of the DRY motif and the missing "ionic lock" on constitutive activity and G-protein coupling of the human histamine H4 receptor.

Authors:  Erich H Schneider; David Schnell; Andrea Strasser; Stefan Dove; Roland Seifert
Journal:  J Pharmacol Exp Ther       Date:  2010-01-27       Impact factor: 4.030

10.  Structure and function of an irreversible agonist-β(2) adrenoceptor complex.

Authors:  Daniel M Rosenbaum; Cheng Zhang; Joseph A Lyons; Ralph Holl; David Aragao; Daniel H Arlow; Søren G F Rasmussen; Hee-Jung Choi; Brian T Devree; Roger K Sunahara; Pil Seok Chae; Samuel H Gellman; Ron O Dror; David E Shaw; William I Weis; Martin Caffrey; Peter Gmeiner; Brian K Kobilka
Journal:  Nature       Date:  2011-01-13       Impact factor: 49.962

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  39 in total

Review 1.  Structural approaches to understanding retinal proteins needed for vision.

Authors:  Tivadar Orban; Beata Jastrzebska; Krzysztof Palczewski
Journal:  Curr Opin Cell Biol       Date:  2013-11-28       Impact factor: 8.382

2.  Structural basis of G protein-coupled receptor-Gi protein interaction: formation of the cannabinoid CB2 receptor-Gi protein complex.

Authors:  Jagjeet S Mnpotra; Zhuanhong Qiao; Jian Cai; Diane L Lynch; Alan Grossfield; Nicholas Leioatts; Dow P Hurst; Michael C Pitman; Zhao-Hui Song; Patricia H Reggio
Journal:  J Biol Chem       Date:  2014-05-22       Impact factor: 5.157

3.  Design, Synthesis, and Characterization of 4-Undecylpiperidine-2-carboxamides as Positive Allosteric Modulators of the Serotonin (5-HT) 5-HT2C Receptor.

Authors:  Christopher T Wild; Joanna M Miszkiel; Eric A Wold; Claudia A Soto; Chunyong Ding; Rachel M Hartley; Mark A White; Noelle C Anastasio; Kathryn A Cunningham; Jia Zhou
Journal:  J Med Chem       Date:  2018-04-13       Impact factor: 7.446

4.  Bacterial chemoreceptor dynamics correlate with activity state and are coupled over long distances.

Authors:  Dipanjan Samanta; Peter P Borbat; Boris Dzikovski; Jack H Freed; Brian R Crane
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-09       Impact factor: 11.205

5.  A transient interaction between the phosphate binding loop and switch I contributes to the allosteric network between receptor and nucleotide in Gαi1.

Authors:  Tarjani M Thaker; Maruf Sarwar; Anita M Preininger; Heidi E Hamm; T M Iverson
Journal:  J Biol Chem       Date:  2014-03-04       Impact factor: 5.157

Review 6.  Heterotrimeric Gq proteins as therapeutic targets?

Authors:  Evi Kostenis; Eva Marie Pfeil; Suvi Annala
Journal:  J Biol Chem       Date:  2020-03-02       Impact factor: 5.157

7.  Chemistry and biology of the initial steps in vision: the Friedenwald lecture.

Authors:  Krzysztof Palczewski
Journal:  Invest Ophthalmol Vis Sci       Date:  2014-10-22       Impact factor: 4.799

8.  Assembly of a GPCR-G Protein Complex.

Authors:  Yang Du; Nguyen Minh Duc; Søren G F Rasmussen; Daniel Hilger; Xavier Kubiak; Liwen Wang; Jennifer Bohon; Hee Ryung Kim; Marcin Wegrecki; Awuri Asuru; Kyung Min Jeong; Jeongmi Lee; Mark R Chance; David T Lodowski; Brian K Kobilka; Ka Young Chung
Journal:  Cell       Date:  2019-05-09       Impact factor: 41.582

9.  5-HT2C Receptor Structures Reveal the Structural Basis of GPCR Polypharmacology.

Authors:  Yao Peng; John D McCorvy; Kasper Harpsøe; Katherine Lansu; Shuguang Yuan; Petr Popov; Lu Qu; Mengchen Pu; Tao Che; Louise F Nikolajsen; Xi-Ping Huang; Yiran Wu; Ling Shen; Walden E Bjørn-Yoshimoto; Kang Ding; Daniel Wacker; Gye Won Han; Jianjun Cheng; Vsevolod Katritch; Anders A Jensen; Michael A Hanson; Suwen Zhao; David E Gloriam; Bryan L Roth; Raymond C Stevens; Zhi-Jie Liu
Journal:  Cell       Date:  2018-02-01       Impact factor: 41.582

10.  Crucial role of the orexin-B C-terminus in the induction of OX1 receptor-mediated apoptosis: analysis by alanine scanning, molecular modelling and site-directed mutagenesis.

Authors:  Pascal Nicole; Pierre Couvineau; Nadege Jamin; Thierry Voisin; Alain Couvineau
Journal:  Br J Pharmacol       Date:  2015-09-30       Impact factor: 8.739

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