Literature DB >> 23599619

Clinical relevance of cancer genome sequencing.

Chee Seng Ku, David N Cooper, Dimitrios H Roukos.   

Abstract

The arrival of both high-throughput and bench-top next-generation sequencing technologies and sequence enrichment methods has revolutionized our approach to dissecting the genetic basis of cancer. These technologies have been almost invariably employed in whole-genome sequencing (WGS) and whole-exome sequencing (WES) studies. Both WGS and WES approaches have been widely applied to interrogate the somatic mutational landscape of sporadic cancers and identify novel germline mutations underlying familial cancer syndromes. The clinical implications of cancer genome sequencing have become increasingly clear, for example in diagnostics. In this editorial, we present these advances in the context of research discovery and discuss both the clinical relevance of cancer genome sequencing and the challenges associated with the adoption of these genomic technologies in a clinical setting.

Entities:  

Keywords:  Cancer; Diagnostics; Exome; Familial cancer syndrome; Next-generation sequencing; Somatic mutation

Mesh:

Year:  2013        PMID: 23599619      PMCID: PMC3623977          DOI: 10.3748/wjg.v19.i13.2011

Source DB:  PubMed          Journal:  World J Gastroenterol        ISSN: 1007-9327            Impact factor:   5.742


  46 in total

Review 1.  Technological advances in DNA sequence enrichment and sequencing for germline genetic diagnosis.

Authors:  Chee-Seng Ku; Mengchu Wu; David N Cooper; Nasheen Naidoo; Yudi Pawitan; Brendan Pang; Barry Iacopetta; Richie Soong
Journal:  Expert Rev Mol Diagn       Date:  2012-03       Impact factor: 5.225

Review 2.  Exome sequencing: dual role as a discovery and diagnostic tool.

Authors:  Chee-Seng Ku; David N Cooper; Constantin Polychronakos; Nasheen Naidoo; Mengchu Wu; Richie Soong
Journal:  Ann Neurol       Date:  2012-01       Impact factor: 10.422

3.  Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma.

Authors:  Jeremy Schwartzentruber; Andrey Korshunov; Xiao-Yang Liu; David T W Jones; Elke Pfaff; Karine Jacob; Dominik Sturm; Adam M Fontebasso; Dong-Anh Khuong Quang; Martje Tönjes; Volker Hovestadt; Steffen Albrecht; Marcel Kool; Andre Nantel; Carolin Konermann; Anders Lindroth; Natalie Jäger; Tobias Rausch; Marina Ryzhova; Jan O Korbel; Thomas Hielscher; Peter Hauser; Miklos Garami; Almos Klekner; Laszlo Bognar; Martin Ebinger; Martin U Schuhmann; Wolfram Scheurlen; Arnulf Pekrun; Michael C Frühwald; Wolfgang Roggendorf; Christoph Kramm; Matthias Dürken; Jeffrey Atkinson; Pierre Lepage; Alexandre Montpetit; Magdalena Zakrzewska; Krzystof Zakrzewski; Pawel P Liberski; Zhifeng Dong; Peter Siegel; Andreas E Kulozik; Marc Zapatka; Abhijit Guha; David Malkin; Jörg Felsberg; Guido Reifenberger; Andreas von Deimling; Koichi Ichimura; V Peter Collins; Hendrik Witt; Till Milde; Olaf Witt; Cindy Zhang; Pedro Castelo-Branco; Peter Lichter; Damien Faury; Uri Tabori; Christoph Plass; Jacek Majewski; Stefan M Pfister; Nada Jabado
Journal:  Nature       Date:  2012-01-29       Impact factor: 49.962

4.  Exome sequencing identifies frequent mutation of ARID1A in molecular subtypes of gastric cancer.

Authors:  Kai Wang; Junsuo Kan; Siu Tsan Yuen; Stephanie T Shi; Kent Man Chu; Simon Law; Tsun Leung Chan; Zhengyan Kan; Annie S Y Chan; Wai Yin Tsui; Siu Po Lee; Siu Lun Ho; Anthony K W Chan; Grace H W Cheng; Peter C Roberts; Paul A Rejto; Neil W Gibson; David J Pocalyko; Mao Mao; Jiangchun Xu; Suet Yi Leung
Journal:  Nat Genet       Date:  2011-10-30       Impact factor: 38.330

5.  Inactivating mutations of the chromatin remodeling gene ARID2 in hepatocellular carcinoma.

Authors:  Meng Li; Hong Zhao; Xiaosong Zhang; Laura D Wood; Robert A Anders; Michael A Choti; Timothy M Pawlik; Hubert D Daniel; Rajesh Kannangai; G Johan A Offerhaus; Victor E Velculescu; Linfang Wang; Shibin Zhou; Bert Vogelstein; Ralph H Hruban; Nick Papadopoulos; Jianqiang Cai; Michael S Torbenson; Kenneth W Kinzler
Journal:  Nat Genet       Date:  2011-08-07       Impact factor: 38.330

6.  Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma.

Authors:  Sergey I Nikolaev; Donata Rimoldi; Christian Iseli; Armand Valsesia; Daniel Robyr; Corinne Gehrig; Keith Harshman; Michel Guipponi; Olesya Bukach; Vincent Zoete; Olivier Michielin; Katja Muehlethaler; Daniel Speiser; Jacques S Beckmann; Ioannis Xenarios; Thanos D Halazonetis; C Victor Jongeneel; Brian J Stevenson; Stylianos E Antonarakis
Journal:  Nat Genet       Date:  2011-12-25       Impact factor: 38.330

7.  Dissecting therapeutic resistance to RAF inhibition in melanoma by tumor genomic profiling.

Authors:  Nikhil Wagle; Caroline Emery; Michael F Berger; Matthew J Davis; Allison Sawyer; Panisa Pochanard; Sarah M Kehoe; Cory M Johannessen; Laura E Macconaill; William C Hahn; Matthew Meyerson; Levi A Garraway
Journal:  J Clin Oncol       Date:  2011-03-07       Impact factor: 44.544

8.  Personalized oncology through integrative high-throughput sequencing: a pilot study.

Authors:  Sameek Roychowdhury; Matthew K Iyer; Dan R Robinson; Robert J Lonigro; Yi-Mi Wu; Xuhong Cao; Shanker Kalyana-Sundaram; Lee Sam; O Alejandro Balbin; Michael J Quist; Terrence Barrette; Jessica Everett; Javed Siddiqui; Lakshmi P Kunju; Nora Navone; John C Araujo; Patricia Troncoso; Christopher J Logothetis; Jeffrey W Innis; David C Smith; Christopher D Lao; Scott Y Kim; J Scott Roberts; Stephen B Gruber; Kenneth J Pienta; Moshe Talpaz; Arul M Chinnaiyan
Journal:  Sci Transl Med       Date:  2011-11-30       Impact factor: 17.956

9.  Frequent somatic mutations in MAP3K5 and MAP3K9 in metastatic melanoma identified by exome sequencing.

Authors:  Mitchell S Stark; Susan L Woods; Michael G Gartside; Vanessa F Bonazzi; Ken Dutton-Regester; Lauren G Aoude; Donald Chow; Chris Sereduk; Natalie M Niemi; Nanyun Tang; Jonathan J Ellis; Jeffrey Reid; Victoria Zismann; Sonika Tyagi; Donna Muzny; Irene Newsham; YuanQing Wu; Jane M Palmer; Thomas Pollak; David Youngkin; Bradford R Brooks; Catherine Lanagan; Christopher W Schmidt; Bostjan Kobe; Jeffrey P MacKeigan; Hongwei Yin; Kevin M Brown; Richard Gibbs; Jeffrey Trent; Nicholas K Hayward
Journal:  Nat Genet       Date:  2011-12-25       Impact factor: 38.330

Review 10.  Targeted enrichment of genomic DNA regions for next-generation sequencing.

Authors:  Florian Mertes; Abdou Elsharawy; Sascha Sauer; Joop M L M van Helvoort; P J van der Zaag; Andre Franke; Mats Nilsson; Hans Lehrach; Anthony J Brookes
Journal:  Brief Funct Genomics       Date:  2011-11-26       Impact factor: 4.241

View more
  7 in total

1.  Next-generation sequencing-based multigene mutational screening for acute myeloid leukemia using MiSeq: applicability for diagnostics and disease monitoring.

Authors:  Rajyalakshmi Luthra; Keyur P Patel; Neelima G Reddy; Varan Haghshenas; Mark J Routbort; Michael A Harmon; Bedia A Barkoh; Rashmi Kanagal-Shamanna; Farhad Ravandi; Jorge E Cortes; Hagop M Kantarjian; L Jeffrey Medeiros; Rajesh R Singh
Journal:  Haematologica       Date:  2013-10-18       Impact factor: 9.941

2.  A genetic counselor's guide to using next-generation sequencing in clinical practice.

Authors:  Flavia M Facio; Kristy Lee; Julianne M O'Daniel
Journal:  J Genet Couns       Date:  2013-10-24       Impact factor: 2.537

3.  Laparoscopic resections and ENCODE-guided genomics to advance surgery and oncology.

Authors:  Christof Hottenrott
Journal:  Surg Endosc       Date:  2014-02-25       Impact factor: 4.584

Review 4.  Genetic Testing for Polyposis Syndromes.

Authors:  Khateriaa Pyrtel
Journal:  Clin Colon Rectal Surg       Date:  2016-12

Review 5.  Clinical advances in molecular biomarkers for cancer diagnosis and therapy.

Authors:  Seema Sethi; Shadan Ali; Philip A Philip; Fazlul H Sarkar
Journal:  Int J Mol Sci       Date:  2013-07-16       Impact factor: 5.923

6.  Whole-exome sequencing supports genetic heterogeneity in childhood apraxia of speech.

Authors:  Elizabeth A Worthey; Gordana Raca; Jennifer J Laffin; Brandon M Wilk; Jeremy M Harris; Kathy J Jakielski; David P Dimmock; Edythe A Strand; Lawrence D Shriberg
Journal:  J Neurodev Disord       Date:  2013-10-02       Impact factor: 4.025

7.  Versatile ion S5XL sequencer for targeted next generation sequencing of solid tumors in a clinical laboratory.

Authors:  Meenakshi Mehrotra; Dzifa Yawa Duose; Rajesh R Singh; Bedia A Barkoh; Jawad Manekia; Michael A Harmon; Keyur P Patel; Mark J Routbort; L Jeffrey Medeiros; Ignacio I Wistuba; Rajyalakshmi Luthra
Journal:  PLoS One       Date:  2017-08-02       Impact factor: 3.240

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.