Literature DB >> 23599463

Comment on "Drosophila dosage compensation involves enhanced Pol II recruitment to male X-linked promoters".

F Ferrari1, Y L Jung, P V Kharchenko, A Plachetka, A A Alekseyenko, M I Kuroda, P J Park.   

Abstract

Conrad et al. (Reports, 10 August 2012, p. 742) reported a doubling of RNA polymerase II (Pol II) occupancy at X-linked promoters to support 5' recruitment as the key mechanism for dosage compensation in Drosophila. However, they employed an erroneous data-processing step, overestimating Pol II differences. Reanalysis of the data fails to support the authors' model for dosage compensation.

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Year:  2013        PMID： 23599463      PMCID： PMC3665607          DOI： 10.1126/science.1231815

Source DB:  PubMed          Journal:  Science        ISSN： 0036-8075            Impact factor:   47.728


  7 in total

Review 1.  Drosophila dosage compensation: a complex voyage to the X chromosome.

Authors:  Marnie E Gelbart; Mitzi I Kuroda
Journal:  Development       Date:  2009-05       Impact factor: 6.868

2.  Drosophila dosage compensation involves enhanced Pol II recruitment to male X-linked promoters.

Authors:  Thomas Conrad; Florence M G Cavalli; Juan M Vaquerizas; Nicholas M Luscombe; Asifa Akhtar
Journal:  Science       Date:  2012-07-19       Impact factor: 47.728

3.  mof, a putative acetyl transferase gene related to the Tip60 and MOZ human genes and to the SAS genes of yeast, is required for dosage compensation in Drosophila.

Authors:  A Hilfiker; D Hilfiker-Kleiner; A Pannuti; J C Lucchesi
Journal:  EMBO J       Date:  1997-04-15       Impact factor: 11.598

Review 4.  Dosage compensation in Drosophila melanogaster: epigenetic fine-tuning of chromosome-wide transcription.

Authors:  Thomas Conrad; Asifa Akhtar
Journal:  Nat Rev Genet       Date:  2012-01-18       Impact factor: 53.242

5.  Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila.

Authors:  Sergei Nechaev; David C Fargo; Gilberto dos Santos; Liwen Liu; Yuan Gao; Karen Adelman
Journal:  Science       Date:  2009-12-10       Impact factor: 47.728

6.  X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila.

Authors:  Erica Larschan; Eric P Bishop; Peter V Kharchenko; Leighton J Core; John T Lis; Peter J Park; Mitzi I Kuroda
Journal:  Nature       Date:  2011-03-03       Impact factor: 49.962

7.  Design and analysis of ChIP-seq experiments for DNA-binding proteins.

Authors:  Peter V Kharchenko; Michael Y Tolstorukov; Peter J Park
Journal:  Nat Biotechnol       Date:  2008-11-16       Impact factor: 54.908
  7 in total
  14 in total

Review 1.  Dosage Compensation in Drosophila-a Model for the Coordinate Regulation of Transcription.

Authors:  Mitzi I Kuroda; Andres Hilfiker; John C Lucchesi
Journal:  Genetics       Date:  2016-10       Impact factor: 4.562

Review 2.  Transcriptional control of a whole chromosome: emerging models for dosage compensation.

Authors:  Francesco Ferrari; Artyom A Alekseyenko; Peter J Park; Mitzi I Kuroda
Journal:  Nat Struct Mol Biol       Date:  2014-02-05       Impact factor: 15.369

3.  Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation.

Authors:  William S Kruesi; Leighton J Core; Colin T Waters; John T Lis; Barbara J Meyer
Journal:  Elife       Date:  2013-06-18       Impact factor: 8.140

Review 4.  Recent progress and open questions in Drosophila dosage compensation.

Authors:  Steven P Vensko; Eric A Stone
Journal:  Fly (Austin)       Date:  2015       Impact factor: 2.160

5.  H2B ubiquitylation promotes RNA Pol II processivity via PAF1 and pTEFb.

Authors:  Lipeng Wu; Li Li; Bo Zhou; Zhaohui Qin; Yali Dou
Journal:  Mol Cell       Date:  2014-05-15       Impact factor: 17.970

6.  "Jump start and gain" model for dosage compensation in Drosophila based on direct sequencing of nascent transcripts.

Authors:  Francesco Ferrari; Annette Plachetka; Artyom A Alekseyenko; Youngsook L Jung; Fatih Ozsolak; Peter V Kharchenko; Peter J Park; Mitzi I Kuroda
Journal:  Cell Rep       Date:  2013-10-31       Impact factor: 9.423

7.  Increased expression of X-linked genes in mammals is associated with a higher stability of transcripts and an increased ribosome density.

Authors:  Marie-Line Faucillion; Jan Larsson
Journal:  Genome Biol Evol       Date:  2015-03-18       Impact factor: 3.416

8.  Best practices for scientific computing.

Authors:  Greg Wilson; D A Aruliah; C Titus Brown; Neil P Chue Hong; Matt Davis; Richard T Guy; Steven H D Haddock; Kathryn D Huff; Ian M Mitchell; Mark D Plumbley; Ben Waugh; Ethan P White; Paul Wilson
Journal:  PLoS Biol       Date:  2014-01-07       Impact factor: 8.029

9.  X-to-autosome expression and msl-2 transcript abundance correlate among Drosophila melanogaster somatic tissues.

Authors:  Steven P Vensko Ii; Eric A Stone
Journal:  PeerJ       Date:  2015-02-17       Impact factor: 2.984

10.  Male X-linked genes in Drosophila melanogaster are compensated independently of the Male-Specific Lethal complex.

Authors:  Philge Philip; Per Stenberg
Journal:  Epigenetics Chromatin       Date:  2013-10-26       Impact factor: 4.954
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