| Literature DB >> 23594729 |
Juan Feng1, Hongbo Liu, Xiaolan Yang, Ang Gao, Juan Liao, Liping Feng, Jun Pu, Yanling Xie, Gaobo Long, Yuanli Li, Fei Liao.
Abstract
BACKGROUND: For screening a library of enzyme mutants, an efficient and cost-effective method for reliable assay of enzyme activity and a decision method for safe recognition of mutants of higher activity are needed. The comparison of activity concentrations of mutants in lysates of transformed Escherichia coli cells against a threshold is unsafe to recognize mutants of higher activity due to variations of both expression levels of mutant proteins and lysis efficiency of transformed cells. Hence, by a spectrophotometric method after verification to measure uricase activity, specific activity calculated from the level of total proteins in a lysate was tested for recognizing a mutant of higher activity.Entities:
Year: 2013 PMID: 23594729 PMCID: PMC3637054 DOI: 10.1186/1752-153X-7-69
Source DB: PubMed Journal: Chem Cent J ISSN: 1752-153X Impact factor: 4.215
Figure 1Interference from HIU with the assay of absorbance at 308 nm after the lag time of 10 s for 0.30 mM uric acid under uricase action at 25°C. a. Effects of activities on interference in 0.10 M Tris–HCl buffer at pH 7.4 b. Effects of activities on interference in 0.20 M borate buffer at pH 7.4 c. Effects of reaction pH on interference in 0.10 M Tris–HCl buffer with final uricase activity at 103 U/L d. Effects of reaction pH on interference in 0.20 M borate buffer with final uricase activity at 103 U/L.
Figure 2Effects of uricase activities on estimated by measuring absorbance at 308 nm in 0.20 M borate buffers at 25°C. Final uric acid concentrations ranged from 0.10 to 0.50 mM at pH 9.2 or 8.2, and from 0.070 to 0.33 mM at pH 7.4. Results were from at least three independent assays with CVs below 12%. Uricase activities were those calibrated with 0.075 mM uric acid at the indicated reaction pH. * indicated P < 0.05 versus that at lower uricase activities by Student t-test.
Figure 3PAGE analyses of proteins in lysates of four uricase mutants. (a) SDS-PAGE and staining of protein bands. (b) PAGE followed by the staining of protein bands (left side) and uricase activity (right side).
Uricase activities at 0.075 mM uric acid and protein levels in lysates (= 30)
| Total proteins by the Bradford assay | 0.63 | 0.66 | 0.65 | 0.66 |
| (0.09) | (0.10) | (0.15) | (0.09) | |
| Activity concentration | 0.30 | 0.28 | 0.18 | 0.033 |
| (0.07) | (0.06) | (0.05) | (0.004) | |
| 0.104 | 0.182 | 0.439 | 0.282 | |
| Correlation coefficient ( | >0.63 | >0.81 | >0.84 | >0.44 |
| Specific activity | 0.49 | 0.43 | 0.28 | 0.050 |
| (0.09) | (0.05) | (0.05) | (0.006) | |
| <0.001 | 0.310 | 0.972 | 0.031 |
Numbers in parentheses were SD. Correlation coefficient was that for the association of activity concentrations with levels of total proteins. R > 0.361 and > 0.464 indicated P < 0.05 and P < 0.01 for the association of activity concentrations with proteins levels, respectively. SA: specific activity; AC: activity concentration.
ROC analysis of activities in lysates (= 30)
| A-B | 1.37 | 1.07 | 0.559 | 1.19 | 0.799 |
| B-C | 1.58 | 1.54 | 0.895 | 1.56 | 0.985 |
| A-C | 2.15 | 1.67 | 0.921 | 1.82 | 1.000 |
| C-D | 1.90 | 5.45 | 1.000 | 5.60 | 1.000 |
| B-D | 3.00 | 8.48 | 1.000 | 8.60 | 1.000 |
| A-D | 4.10 | 9.09 | 1.000 | 9.92 | 1.000 |
Based on error propagation, the experimental ratios in pairs had CVs about 20%. SA: specific activity; AC: activity concentration.
Figure 4ROC analysis of the pair of uricase with ratio of about 1.80 for their catalytic capacities and associations of normalized cutoffs (×0.1) with 1-specificity. SA: specific activity; AC: activity concentration