| Literature DB >> 23593520 |
Johanna F Lindahl1, Karl Ståhl, Jan Chirico, Sofia Boqvist, Ho Thi Viet Thu, Ulf Magnusson.
Abstract
Japanese encephalitis virus (JEV) is a mosquito-borne, zoonotic flavivirus causing encephalitis in humans and reproductive disorder in pigs. JEV is present in large parts of Asia, where urbanization is high. Households within and outside Can Tho city, South Vietnam, were selected to monitor circulation of JEV. A nested RT-PCR was established to detect the presence of JEV in mosquitoes whereas sera from pigs belonging to households within the province were analyzed for the presence of antibodies to JEV. A total of 7885 mosquitoes were collected and divided into 352 pools whereof seven were JEV-positive, six of which were collected within the city. Fragments from four pools clustered with JEV genotype III and three with genotype I. Of the 43 pigs sampled inside the city 100% had JEV antibodies. Our study demonstrates exposure to JEV in pigs, and co-circulation of JEV genotype I and III in mosquitoes within an urban environment in South Vietnam. Thus, although JEV has mainly been considered a rural disease, the potential for transmission in urban areas cannot be ignored.Entities:
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Year: 2013 PMID: 23593520 PMCID: PMC3617195 DOI: 10.1371/journal.pntd.0002153
Source DB: PubMed Journal: PLoS Negl Trop Dis ISSN: 1935-2727
Primers and probe in a nested RT-PCR for Japanese encephalitis virus (JEV).
| Primers used | Sequence 5′- 3′ | Position in JEV genome | Reference |
| Outer forward (emf1) |
| 10099–10119 | Pierre et. al (1994) |
| Outer reverse (vd8) |
| 10771–10752 | Pierre et. al (1994) |
| Inner forward |
| 10224–10242 | Pyke et al. (2004) |
| Inner reverse |
| 10286–10267 | Pyke et al. (2004) |
| Probe | FAM- | 10244–10263 | Pyke et al. (2004) |
Nested RT-PCR results of samples spiked with Japanese encephalitis virus.
| Sample | Dilution | Nested RT-PCR | |
| Positive/runs in total | Mean ct | ||
| JEV diluted 1∶1000 in TRIzol | 1∶1 | 2/2 | 14.7 |
| Reagent | 1∶10 | 2/2 | 16.6 |
| 1∶100 | 3/3 | 17.2 | |
| 1∶1 000 | 3/3 | 21.2 | |
| 1∶10 000 | 2/2 | 26.3 | |
| 1∶100 000 | 2/2 | 28.6 | |
| JEV diluted 1∶1000 in | 1∶1 | 0/3 | |
| homogenate of 5 mosquitoes | 1∶10 | 2/3 | 34.0 |
| in TRIzol Reagent | 1∶100 | 3/3 | 22.0 |
| 1∶1 000 | 2/3 | 23.2 | |
| 1∶10 000 | 3/3 | 31.2 | |
| 1∶100 000 | 1/3 | 34.2 | |
| JEV diluted 1∶1000 in | 1∶1 | 0/2 | |
| homogenate of 50 | 1∶10 | 0/2 | |
| mosquitoes in TRIzol | 1∶100 | 2/2 | 20.6 |
| Reagent | 1∶1 000 | 2/2 | 24.6 |
| 1∶10 000 | 2/2 | 29.6 | |
| 1∶100 000 | 2/2 | 36.4 | |
Mean cycle threshold for the positive runs.
Figure 1Map showing human population densities in the urban Ninh Kieu district, Can Tho city, Vietnam.
Households included for mosquito collections are identified with letters and circles show households where blood samples were also collected from pigs. In households where JEV was detected within the city, this is shown by the roman number for the JEV genotype. The insert of the entire Can Tho city province show collection sites in Co Do district (according to district boundaries in 2009).
Households in Can Tho city with mosquito pools positive for Japanese encephalitis virus.
| Population/km2 | |||||||
| Sample | Period | Location | Humans | Pigs | Pigs in household | No. of mosquitoes | Genotype |
| Household D | Spring | Ninh Kieu | 31 447 | 26 | 11 | 9 | III |
| Household D | Fall | Ninh Kieu | 31 447 | 26 | 14 | 39 | III |
| Household T | Fall | Ninh Kieu | 3 706 | 30 | 4 | 30 | III |
| Household I | Spring | Ninh Kieu | 12 333 | 17 | 26 | 50 unidentified | I |
| Household S | Fall | Ninh Kieu | 1 703 | 205 | 110 | 50 unidentified | III |
| Household S | Fall | Ninh Kieu | 1 703 | 205 | 110 | 50 unidentified | I |
| Household X | Fall | Co Do | 500 | 20 | 134 | 25 | I |
Maximum likelihood estimate (MLE) for Japanese encephalitis virus in Can Tho city.
| MLE per 1000 mosquitoes | 95% Confidence interval | MLE urban | 95% Confidence interval | |
| All species | 1.0 | 0.4–2.0 | 0.9 | 0.4–1.8 |
| (including unidentified mosquitoes) | ||||
|
| 16 | 0.4–4.4 | 1.2 | 0.2–3.8 |
|
| 1.3 | 0.1–6.3 | 1.4 | 0.1–6.6 |
only including Ninh Kieu district, the urban area of Can Tho city.
Figure 2Phylogenetic tree showing the 5 genotypes of Japanese encephalitis virus (I-V).
The seven positive mosquito pools (in italics) are named after the household.