| Literature DB >> 23592921 |
Thomas M Bennett1, Giovanni Maraini, Chongfei Jin, Wenmin Sun, J Fielding Hejtmancik, Alan Shiels.
Abstract
PURPOSE: Cataract is a clinically and genetically heterogeneous disorder of the ocular lens and an important cause of visual impairment. The aim of this study was to map and identify the gene underlying autosomal dominant cataract segregating in a four-generation family, determine the lens expression profile of the identified gene, and test for its association with age-related cataract in a case-control cohort.Entities:
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Year: 2013 PMID: 23592921 PMCID: PMC3626299
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
PCR primers used for amplification of human FTL and LIM2, and mouse FTL1.
| Primer | Location | Strand | Sequence (5′ - 3′) |
|---|---|---|---|
| FTL-IREF | 5′-UTR | sense | ATTTCACAACACGCTGGCGCTACA |
| FTL-Ex1R | Intron-1 | antisense | TCTGTTTACCCGACCGCACAAAGA |
| 32G>TR | IRE | antisense | GTTCCGTCCAAACACTGTTGAAGA |
| FTL-Ex2F | Intron-1 | sense | GAGTCCCCTTGGCCTCG |
| FTL-Ex2R | Intron-2 | antisense | GACACCTACGCCCTCAAATC |
| FTL-Ex3F | Intron-2 | sense | CCAACGACTCTTGGGAAATG |
| FTL-Ex3R | Intron-3 | antisense | AAAGGGAGCAGAGGCTTGAG |
| FTL-Ex4F | Intron-3 | sense | TCAGAGCCTCATTTCACACC |
| FTL-Ex4R | Exon-4 | antisense | CCAACTCCTCTTTCACTGGC |
| FTL-Start | Exon-1 | sense | |
| FTL-Stop | Exon-4 | antisense | |
| FTL1-Start | Exon-1 | sense | |
| FTL1-Stop | Exon-4 | antisense | |
| LIM2-Ex1F | Exon-1 | sense | GGACTTCCAGGTTCTGAGCAAGG |
| LIM2-Ex1R | Intron-1 | antisense | CGGACAAAGCCAGGGTTGCT |
| LIM2-Ex2F | Intron-1 | sense | TGTGCATGACACCTCTGAAGCG |
| LIM2-Ex2R | Intron-2 | antisense | GCATCCCACTCCTGAGCCCT |
| LIM2-Ex3F | Intron-2 | sense | GCTGAGGTGGAAGCAGTCTTGC |
| LIM2-Ex3R | Intron-3 | antisense | TTGCCAGGTGAAGAAGAGGGC |
| LIM2-Ex4F | Intron-3 | sense | CCCAACACCCTACTCTCTTTCTCCC |
| LIM2-Ex4R | Intron-4 | antisense | CCAAATATTGTTTCTCCCTCCCAGG |
| LIM2-Ex5F | Intron-4 | sense | CCACCCTTACAGCTGTTTCTCCC |
| LIM2-Ex5R | Exon-5 | antisense | CCCACATGAGTCCCACAGCA |
Gene-specific primer-pairs used for amplification and sequencing of exons or transcripts.
Figure 1Linkage analysis of autosomal dominant cataract found to segregate in a four-generation Caucasian-American pedigree. A: Pedigree and haplotype analysis shows segregation of SNP and microsatellite markers on chromosome 19q, listed in descending order from the centromere (19p-tel). Squares and circles symbolize males and females, respectively. Filled symbols and bars denote affected status and haplotypes, respectively. B: Slit-lamp retroillumination image of a lens from individual IV:3 before surgery at ~3 months of age reveals stellate opacities that appear as paler regions of light scattering against the retinal red reflex. C: Ideogram of chromosome 19 indicates the location of the cataract locus (shaded gray) and two positional candidate genes.
Figure 2Parametric multipoint logarithm of the odds (pLOD MPT) scores were calculated for linkage between the cataract phenotype and single nucleotide polymorphism (SNP) markers across the genome. Chromosome length is shown in centi-Morgans (cM).
Two-point logarithm of the odds scores (Z) were calculated for linkage between the cataract locus and markers on chromosome 19q.
| Marker (recombinant) | Mb | Z at recombination fraction (Θ)= | |||||||
|---|---|---|---|---|---|---|---|---|---|
| 0.00 | 0.05 | 0.10 | 0.20 | 0.30 | 0.40 | ZMax | ΘMax | ||
| 35.38 | -∞ | −0.64 | −0.38 | −0.16 | −0.06 | −0.01 | 0.00 | 0.50 | |
| D19S220 | 38.43 | 1.66 | 1.51 | 1.35 | 1.01 | 0.66 | 0.30 | 1.66 | 0.00 |
| 43.47 | 1.77 | 1.63 | 1.49 | 1.15 | 0.77 | 0.37 | 1.77 | 0.00 | |
| D19S412 | 47.01 | 1.18 | 1.11 | 1.02 | 0.83 | 0.60 | 0.32 | 1.18 | 0.00 |
| 49.47 | 2.01 | 1.82 | 1.62 | 1.22 | 0.80 | 0.38 | 2.01 | 0.00 | |
| D19S879 | 49.52 | 2.03 | 1.85 | 1.67 | 1.27 | 0.84 | 0.40 | 2.03 | 0.00 |
| 52.07 | 1.91 | 1.73 | 1.55 | 1.17 | 0.77 | 0.37 | 1.91 | 0.00 | |
| 52.62 | -∞ | −0.39 | −0.15 | 0.04 | 0.08 | 0.06 | 0.08 | 0.31 | |
| D19S571 (IV:3) | 53.30 | -∞ | 0.79 | 0.91 | 0.82 | 0.57 | 0.25 | 0.91 | 0.11 |
Z values for markers on 19q are listed in physical order measured in mega base pairs (Mb) from the short-arm telomere (19ptel).
Figure 3Mutation analysis was performed on the ferritin light chain – iron response element sequence. A: Sequence trace of the wild-type allele shows G at nucleotide 168 upstream from the ATG (c.-168G). B: Sequence trace of the mutant allele shows the heterozygous c.-168G>T transversion (denoted K by the International Union of Pure and Applied Chemistry code). C: Allele-specific PCR analysis using the three primers (Table 1) indicated by arrows in the schematic diagram, reveals that the mutant T-allele (277 bp) co-segregates with affected but not unaffected family members.
Figure 4Mouse ferritin light chain-1 (FTL1) and human ferritin light chain (FTL) transcripts are expressed in the lens. A: Low magnification image (sagittal plane) of the mouse eye (postnatal day 21) shows strong localization of ferritin light chain-1 (FTL1) transcripts (red punctate staining) to the equatorial epithelium and peripheral cortical fiber cells of the lens (Co - cornea, CB - ciliary body, and iris, Le - lens, Re - retina). B and C: High-magnification images of FTL1 transcripts expressed in the lens anterior epithelium (B) and equatorial “bow” region (C). Scale bars represent 100 µm. Cell nuclei are stained blue. D: Reverse-transcription polymerase chain reaction (RT–PCR) analysis of lens RNA detects amplicons containing complete coding sequence for FTL and FTL1. Note the FTL1 amplicon (184 codons) is expected to be slightly larger than that of FTL (176 codons).