Literature DB >> 23589651

Novel algorithms and the benefits of comparative validation.

Robert Smith, Dan Ventura, John T Prince.   

Abstract

Mesh：

Year:  2013        PMID： 23589651     DOI： 10.1093/bioinformatics/btt176

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


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  10 in total

1.  Testing and Validation of Computational Methods for Mass Spectrometry.

Authors:  Laurent Gatto; Kasper D Hansen; Michael R Hoopmann; Henning Hermjakob; Oliver Kohlbacher; Andreas Beyer
Journal:  J Proteome Res       Date:  2015-11-17       Impact factor: 4.466

2.  The fractured landscape of RNA-seq alignment: the default in our STARs.

Authors:  Sara Ballouz; Alexander Dobin; Thomas R Gingeras; Jesse Gillis
Journal:  Nucleic Acids Res       Date:  2018-06-01       Impact factor: 16.971

3.  Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics.

Authors:  Franck Giacomoni; Gildas Le Corguillé; Misharl Monsoor; Marion Landi; Pierre Pericard; Mélanie Pétéra; Christophe Duperier; Marie Tremblay-Franco; Jean-François Martin; Daniel Jacob; Sophie Goulitquer; Etienne A Thévenot; Christophe Caron
Journal:  Bioinformatics       Date:  2014-12-19       Impact factor: 6.937

4.  Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism.

Authors:  Daniel Machado; Markus Herrgård
Journal:  PLoS Comput Biol       Date:  2014-04-24       Impact factor: 4.475

5.  Benchmark for multi-cellular segmentation of bright field microscopy images.

Authors:  Assaf Zaritsky; Nathan Manor; Lior Wolf; Eshel Ben-Jacob; Ilan Tsarfaty
Journal:  BMC Bioinformatics       Date:  2013-11-07       Impact factor: 3.169

6.  Identifying restrictions in the order of accumulation of mutations during tumor progression: effects of passengers, evolutionary models, and sampling.

Authors:  Ramon Diaz-Uriarte
Journal:  BMC Bioinformatics       Date:  2015-02-12       Impact factor: 3.169

7.  Current controlled vocabularies are insufficient to uniquely map molecular entities to mass spectrometry signal.

Authors:  Rob Smith; Ryan M Taylor; John T Prince
Journal:  BMC Bioinformatics       Date:  2015-04-23       Impact factor: 3.169

8.  CTF Challenge: Result summary.

Authors:  Roberto Marabini; Bridget Carragher; Shaoxia Chen; James Chen; Anchi Cheng; Kenneth H Downing; Joachim Frank; Robert A Grassucci; J Bernard Heymann; Wen Jiang; Slavica Jonic; Hstau Y Liao; Steven J Ludtke; Shail Patwari; Angela L Piotrowski; Adrian Quintana; Carlos O S Sorzano; Henning Stahlberg; Javier Vargas; Neil R Voss; Wah Chiu; Jose M Carazo
Journal:  J Struct Biol       Date:  2015-04-23       Impact factor: 2.867

9.  A novel procedure for statistical inference and verification of gene regulatory subnetwork.

Authors:  Haijun Gong; Jakob Klinger; Kevin Damazyn; Xiangrui Li; Shiyang Huang
Journal:  BMC Bioinformatics       Date:  2015-04-23       Impact factor: 3.169

10.  Proteomics, lipidomics, metabolomics: a mass spectrometry tutorial from a computer scientist's point of view.

Authors:  Rob Smith; Andrew D Mathis; Dan Ventura; John T Prince
Journal:  BMC Bioinformatics       Date:  2014-05-28       Impact factor: 3.169
  10 in total

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