Literature DB >> 23588509

The Medical Imaging Interaction Toolkit: challenges and advances : 10 years of open-source development.

Marco Nolden1, Sascha Zelzer, Alexander Seitel, Diana Wald, Michael Müller, Alfred M Franz, Daniel Maleike, Markus Fangerau, Matthias Baumhauer, Lena Maier-Hein, Klaus H Maier-Hein, Hans-Peter Meinzer, Ivo Wolf.   

Abstract

PURPOSE: The Medical Imaging Interaction Toolkit (MITK) has been available as open-source software for almost 10 years now. In this period the requirements of software systems in the medical image processing domain have become increasingly complex. The aim of this paper is to show how MITK evolved into a software system that is able to cover all steps of a clinical workflow including data retrieval, image analysis, diagnosis, treatment planning, intervention support, and treatment control.
METHODS: MITK provides modularization and extensibility on different levels. In addition to the original toolkit, a module system, micro services for small, system-wide features, a service-oriented architecture based on the Open Services Gateway initiative (OSGi) standard, and an extensible and configurable application framework allow MITK to be used, extended and deployed as needed. A refined software process was implemented to deliver high-quality software, ease the fulfillment of regulatory requirements, and enable teamwork in mixed-competence teams.
RESULTS: MITK has been applied by a worldwide community and integrated into a variety of solutions, either at the toolkit level or as an application framework with custom extensions. The MITK Workbench has been released as a highly extensible and customizable end-user application. Optional support for tool tracking, image-guided therapy, diffusion imaging as well as various external packages (e.g. CTK, DCMTK, OpenCV, SOFA, Python) is available. MITK has also been used in several FDA/CE-certified applications, which demonstrates the high-quality software and rigorous development process.
CONCLUSIONS: MITK provides a versatile platform with a high degree of modularization and interoperability and is well suited to meet the challenging tasks of today's and tomorrow's clinically motivated research.

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Year:  2013        PMID: 23588509     DOI: 10.1007/s11548-013-0840-8

Source DB:  PubMed          Journal:  Int J Comput Assist Radiol Surg        ISSN: 1861-6410            Impact factor:   2.924


  10 in total

1.  An electromagnetic navigation system for transbronchial interventions with a novel approach to respiratory motion compensation.

Authors:  Ingmar Gergel; Jan Hering; Ralf Tetzlaff; Hans-Peter Meinzer; Ingmar Wegner
Journal:  Med Phys       Date:  2011-12       Impact factor: 4.071

2.  The case for open computer programs.

Authors:  Darrel C Ince; Leslie Hatton; John Graham-Cumming
Journal:  Nature       Date:  2012-02-22       Impact factor: 49.962

3.  The medical imaging interaction toolkit.

Authors:  Ivo Wolf; Marcus Vetter; Ingmar Wegner; Thomas Böttger; Marco Nolden; Max Schöbinger; Mark Hastenteufel; Tobias Kunert; Hans-Peter Meinzer
Journal:  Med Image Anal       Date:  2005-12       Impact factor: 8.545

4.  A quality-refinement process for medical imaging applications.

Authors:  J Neuhaus; D Maleike; M Nolden; H-G Kenngott; H-P Meinzer; I Wolf
Journal:  Methods Inf Med       Date:  2009-06-05       Impact factor: 2.176

5.  MITK-ToF--range data within MITK.

Authors:  Alexander Seitel; Kwong Yung; Sven Mersmann; Thomas Kilgus; Anja Groch; Thiago R dos Santos; Alfred M Franz; Marco Nolden; Hans-Peter Meinzer; Lena Maier-Hein
Journal:  Int J Comput Assist Radiol Surg       Date:  2011-05-31       Impact factor: 2.924

6.  Computer-assisted trajectory planning for percutaneous needle insertions.

Authors:  Alexander Seitel; Markus Engel; Christof M Sommer; Boris A Radeleff; Caroline Essert-Villard; Claire Baegert; Markus Fangerau; Klaus H Fritzsche; Kwong Yung; Hans-Peter Meinzer; Lena Maier-Hein
Journal:  Med Phys       Date:  2011-06       Impact factor: 4.071

7.  MITK diffusion imaging.

Authors:  K H Fritzsche; P F Neher; I Reicht; T van Bruggen; C Goch; M Reisert; M Nolden; S Zelzer; H-P Meinzer; B Stieltjes
Journal:  Methods Inf Med       Date:  2012-09-28       Impact factor: 2.176

8.  Mobile augmented reality for computer-assisted percutaneous nephrolithotomy.

Authors:  Michael Müller; Marie-Claire Rassweiler; Jan Klein; Alexander Seitel; Matthias Gondan; Matthias Baumhauer; Dogu Teber; Jens J Rassweiler; Hans-Peter Meinzer; Lena Maier-Hein
Journal:  Int J Comput Assist Radiol Surg       Date:  2013-03-23       Impact factor: 2.924

Review 9.  OsiriX: an open-source software for navigating in multidimensional DICOM images.

Authors:  Antoine Rosset; Luca Spadola; Osman Ratib
Journal:  J Digit Imaging       Date:  2004-06-29       Impact factor: 4.056

10.  The image-guided surgery toolkit IGSTK: an open source C++ software toolkit.

Authors:  Andinet Enquobahrie; Patrick Cheng; Kevin Gary; Luis Ibanez; David Gobbi; Frank Lindseth; Ziv Yaniv; Stephen Aylward; Julien Jomier; Kevin Cleary
Journal:  J Digit Imaging       Date:  2007-08-17       Impact factor: 4.056

  10 in total
  109 in total

1.  Intra-operative adjustment of standard planes in C-arm CT image data.

Authors:  Michael Brehler; Joseph Görres; Jochen Franke; Karl Barth; Sven Y Vetter; Paul A Grützner; Hans-Peter Meinzer; Ivo Wolf; Diana Nabers
Journal:  Int J Comput Assist Radiol Surg       Date:  2015-08-28       Impact factor: 2.924

2.  Evaluation of pre-surgical models for uterine surgery by use of three-dimensional printing and mold casting.

Authors:  Sayed Ahmad Zikri Bin Sayed Aluwee; Xiangrong Zhou; Hiroki Kato; Hiroshi Makino; Chisako Muramatsu; Takeshi Hara; Masayuki Matsuo; Hiroshi Fujita
Journal:  Radiol Phys Technol       Date:  2017-04-12

3.  Relaxation-compensated amide proton transfer (APT) MRI signal intensity is associated with survival and progression in high-grade glioma patients.

Authors:  Daniel Paech; Constantin Dreher; Sebastian Regnery; Jan-Eric Meissner; Steffen Goerke; Johannes Windschuh; Johanna Oberhollenzer; Miriam Schultheiss; Katerina Deike-Hofmann; Sebastian Bickelhaupt; Alexander Radbruch; Moritz Zaiss; Andreas Unterberg; Wolfgang Wick; Martin Bendszus; Peter Bachert; Mark E Ladd; Heinz-Peter Schlemmer
Journal:  Eur Radiol       Date:  2019-02-26       Impact factor: 5.315

4.  MITK-US: real-time ultrasound support within MITK.

Authors:  K März; A M Franz; A Seitel; A Winterstein; R Bendl; S Zelzer; M Nolden; H-P Meinzer; L Maier-Hein
Journal:  Int J Comput Assist Radiol Surg       Date:  2013-12-17       Impact factor: 2.924

5.  Using a shape prior for robust modeling of the mitral annulus on 4D ultrasound data.

Authors:  B Graser; D Wald; S Al-Maisary; M Grossgasteiger; R de Simone; H-P Meinzer; I Wolf
Journal:  Int J Comput Assist Radiol Surg       Date:  2014-07       Impact factor: 2.924

6.  Quantification of changes in language-related brain areas in autism spectrum disorders using large-scale network analysis.

Authors:  Caspar J Goch; Bram Stieltjes; Romy Henze; Jan Hering; Luise Poustka; Hans-Peter Meinzer; Klaus H Maier-Hein
Journal:  Int J Comput Assist Radiol Surg       Date:  2014-01-24       Impact factor: 2.924

7.  Electromagnetic organ tracking allows for real-time compensation of tissue shift in image-guided laparoscopic rectal surgery: results of a phantom study.

Authors:  M Wagner; M Gondan; C Zöllner; J J Wünscher; F Nickel; L Albala; A Groch; S Suwelack; S Speidel; L Maier-Hein; B P Müller-Stich; H G Kenngott
Journal:  Surg Endosc       Date:  2015-06-23       Impact factor: 4.584

8.  Towards markerless navigation for percutaneous needle insertions.

Authors:  Alexander Seitel; Nadine Bellemann; Mohammadreza Hafezi; Alfred M Franz; Mark Servatius; Arash Saffari; Thomas Kilgus; Heinz-Peter Schlemmer; Arianeb Mehrabi; Boris A Radeleff; Lena Maier-Hein
Journal:  Int J Comput Assist Radiol Surg       Date:  2015-05-28       Impact factor: 2.924

9.  ROS-IGTL-Bridge: an open network interface for image-guided therapy using the ROS environment.

Authors:  Tobias Frank; Axel Krieger; Simon Leonard; Niravkumar A Patel; Junichi Tokuda
Journal:  Int J Comput Assist Radiol Surg       Date:  2017-05-31       Impact factor: 2.924

10.  Lack of centrioles and primary cilia in STIL(-/-) mouse embryos.

Authors:  Ahuvit David; Fengying Liu; Alexandra Tibelius; Julia Vulprecht; Diana Wald; Ulrike Rothermel; Reut Ohana; Alexander Seitel; Jasmin Metzger; Ruth Ashery-Padan; Hans-Peter Meinzer; Hermann-Josef Gröne; Shai Izraeli; Alwin Krämer
Journal:  Cell Cycle       Date:  2014       Impact factor: 4.534

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