Literature DB >> 23588373

Practical implementation of tetrahedral mesh reconstruction in emission tomography.

R Boutchko1, A Sitek, G T Gullberg.   

Abstract

This paper presents a practical implementation of image reconstruction on tetrahedral meshes optimized for emission computed tomography with parallel beam geometry. Tetrahedral mesh built on a point cloud is a convenient image representation method, intrinsically three-dimensional and with a multi-level resolution property. Image intensities are defined at the mesh nodes and linearly interpolated inside each tetrahedron. For the given mesh geometry, the intensities can be computed directly from tomographic projections using iterative reconstruction algorithms with a system matrix calculated using an exact analytical formula. The mesh geometry is optimized for a specific patient using a two stage process. First, a noisy image is reconstructed on a finely-spaced uniform cloud. Then, the geometry of the representation is adaptively transformed through boundary-preserving node motion and elimination. Nodes are removed in constant intensity regions, merged along the boundaries, and moved in the direction of the mean local intensity gradient in order to provide higher node density in the boundary regions. Attenuation correction and detector geometric response are included in the system matrix. Once the mesh geometry is optimized, it is used to generate the final system matrix for ML-EM reconstruction of node intensities and for visualization of the reconstructed images. In dynamic PET or SPECT imaging, the system matrix generation procedure is performed using a quasi-static sinogram, generated by summing projection data from multiple time frames. This system matrix is then used to reconstruct the individual time frame projections. Performance of the new method is evaluated by reconstructing simulated projections of the NCAT phantom and the method is then applied to dynamic SPECT phantom and patient studies and to a dynamic microPET rat study. Tetrahedral mesh-based images are compared to the standard voxel-based reconstruction for both high and low signal-to-noise ratio projection datasets. The results demonstrate that the reconstructed images represented as tetrahedral meshes based on point clouds offer image quality comparable to that achievable using a standard voxel grid while allowing substantial reduction in the number of unknown intensities to be reconstructed and reducing the noise.

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Year:  2013        PMID: 23588373      PMCID: PMC5897048          DOI: 10.1088/0031-9155/58/9/3001

Source DB:  PubMed          Journal:  Phys Med Biol        ISSN: 0031-9155            Impact factor:   3.609


  12 in total

1.  Factor analysis with a priori knowledge--application in dynamic cardiac SPECT.

Authors:  A Sitek; E V Di Bella; G T Gullberg
Journal:  Phys Med Biol       Date:  2000-09       Impact factor: 3.609

2.  Tomographic image reconstruction based on a content-adaptive mesh model.

Authors:  Jovan G Brankov; Yongyi Yang; Miles N Wernick
Journal:  IEEE Trans Med Imaging       Date:  2004-02       Impact factor: 10.048

Review 3.  Dynamic single photon emission computed tomography--basic principles and cardiac applications.

Authors:  Grant T Gullberg; Bryan W Reutter; Arkadiusz Sitek; Jonathan S Maltz; Thomas F Budinger
Journal:  Phys Med Biol       Date:  2010-09-22       Impact factor: 3.609

4.  Spatiotemporal processing of gated cardiac SPECT images using deformable mesh modeling.

Authors:  Jovan G Brankov; Yongyi Yang; Miles N Wernick
Journal:  Med Phys       Date:  2005-09       Impact factor: 4.071

5.  Method of generating multiple sets of experimental phantom data.

Authors:  Arkadiusz Sitek; Bryan W Reutter; Ronald H Huesman; Grant T Gullberg
Journal:  J Nucl Med       Date:  2006-07       Impact factor: 10.057

6.  A fast approach for accurate content-adaptive mesh generation.

Authors:  Yongyi Yang; Miles N Wernick; Jovan G Brankov
Journal:  IEEE Trans Image Process       Date:  2003       Impact factor: 10.856

7.  Evaluation of a 3D point cloud tetrahedral tomographic reconstruction method.

Authors:  N F Pereira; A Sitek
Journal:  Phys Med Biol       Date:  2010-08-24       Impact factor: 3.609

8.  Measuring regional changes in the diastolic deformation of the left ventricle of SHR rats using microPET technology and hyperelastic warping.

Authors:  Alexander I Veress; Jeffrey A Weiss; Ronald H Huesman; Bryan W Reutter; Scott E Taylor; Arek Sitek; Bing Feng; Yongfeng Yang; Grant T Gullberg
Journal:  Ann Biomed Eng       Date:  2008-04-24       Impact factor: 3.934

9.  Realistic CT simulation using the 4D XCAT phantom.

Authors:  W P Segars; M Mahesh; T J Beck; E C Frey; B M W Tsui
Journal:  Med Phys       Date:  2008-08       Impact factor: 4.071

10.  Longitudinal Evaluation of Fatty Acid Metabolism in Normal and Spontaneously Hypertensive Rat Hearts with Dynamic MicroSPECT Imaging.

Authors:  Bryan W Reutter; Ronald H Huesman; Kathleen M Brennan; Rostyslav Boutchko; Stephen M Hanrahan; Grant T Gullberg
Journal:  Int J Mol Imaging       Date:  2010-12-08
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  2 in total

1.  Image reconstruction in higher dimensions: myocardial perfusion imaging of tracer dynamics with cardiac motion due to deformation and respiration.

Authors:  Uttam M Shrestha; Youngho Seo; Elias H Botvinick; Grant T Gullberg
Journal:  Phys Med Biol       Date:  2015-10-09       Impact factor: 3.609

2.  Reconstruction of positron emission tomography images using adaptive sliced remeshing strategy.

Authors:  Ramiro R Colmeiro; Claudio Verrastro; Daniel Minsky; Thomas Grosges
Journal:  J Med Imaging (Bellingham)       Date:  2021-03-01
  2 in total

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