Literature DB >> 11323719

Gal repressosome contains an antiparallel DNA loop.

M Geanacopoulos1, G Vasmatzis, V B Zhurkin, S Adhya.   

Abstract

Gal repressosome assembly and repression of the gal operon in Escherichia coli occurs when two dimeric GalR proteins and the histone-like HU protein bind to cognate sites causing DNA looping. Structure-based genetic analysis defined the GalR surfaces interacting to form a stacked, V-shaped, tetrameric structure. Stereochemical models of the four possible DNA loops compatible with the GalR tetramer configuration were constructed using the sequence-dependent structural parameters of the interoperator DNA and conformation changes caused by GalR and asymmetric HU binding. Evaluation of their DNA elastic energies gave unambiguous preference to a loop structure in which the two gal operators adopt an antiparallel orientation causing undertwisting of DNA.

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Year:  2001        PMID: 11323719     DOI: 10.1038/87595

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  42 in total

1.  Recruitment of HU by piggyback: a special role of GalR in repressosome assembly.

Authors:  S Kar; S Adhya
Journal:  Genes Dev       Date:  2001-09-01       Impact factor: 11.361

2.  Operator-bound GalR dimers close DNA loops by direct interaction: tetramerization and inducer binding.

Authors:  Szabolcs Semsey; Mark Geanacopoulos; Dale E A Lewis; Sankar Adhya
Journal:  EMBO J       Date:  2002-08-15       Impact factor: 11.598

3.  Fluorescence resonance energy transfer over approximately 130 basepairs in hyperstable lac repressor-DNA loops.

Authors:  Laurence M Edelman; Raymond Cheong; Jason D Kahn
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

4.  Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping.

Authors:  Giuseppe Lia; David Bensimon; Vincent Croquette; Jean-Francois Allemand; David Dunlap; Dale E A Lewis; Sankar Adhya; Laura Finzi
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-18       Impact factor: 11.205

5.  DNA trajectory in the Gal repressosome.

Authors:  Szabolcs Semsey; Michail Y Tolstorukov; Konstantin Virnik; Victor B Zhurkin; Sankar Adhya
Journal:  Genes Dev       Date:  2004-08-01       Impact factor: 11.361

6.  Effects of HU binding on the equilibrium cyclization of mismatched, curved, and normal DNA.

Authors:  Haribabu Arthanari; Kristi Wojtuszewski; Ishita Mukerji; Philip H Bolton
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

7.  Disruption of protein-mediated DNA looping by tension in the substrate DNA.

Authors:  Seth Blumberg; Alexei V Tkachenko; Jens-Christian Meiners
Journal:  Biophys J       Date:  2005-01-14       Impact factor: 4.033

8.  Statistical-mechanical theory of DNA looping.

Authors:  Yongli Zhang; Abbye E McEwen; Donald M Crothers; Stephen D Levene
Journal:  Biophys J       Date:  2005-12-16       Impact factor: 4.033

9.  Modeling the Lac repressor-operator assembly: the influence of DNA looping on Lac repressor conformation.

Authors:  David Swigon; Bernard D Coleman; Wilma K Olson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-19       Impact factor: 11.205

10.  Dynamics of single DNA looping and cleavage by Sau3AI and effect of tension applied to the DNA.

Authors:  Gregory J Gemmen; Rachel Millin; Douglas E Smith
Journal:  Biophys J       Date:  2006-09-08       Impact factor: 4.033

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