Literature DB >> 23585552

Genome-wide association study identifies genetic risk underlying primary rhegmatogenous retinal detachment.

Mirna Kirin1, Aman Chandra, David G Charteris, Caroline Hayward, Susan Campbell, Ivana Celap, Goran Bencic, Zoran Vatavuk, Iva Kirac, Allan J Richards, Albert Tenesa, Martin P Snead, Brian W Fleck, Jaswinder Singh, Steven Harsum, Robert E Maclaren, Anneke I den Hollander, Malcolm G Dunlop, Carel B Hoyng, Alan F Wright, Harry Campbell, Veronique Vitart, Danny Mitry.   

Abstract

Rhegmatogenous retinal detachment (RRD) is an important cause of vision loss and can potentially lead to blindness. The underlying pathogenesis is complex and incompletely understood. We applied a two-stage genetic association discovery phase followed by a replication phase in a combined total of 2833 RRD cases and 7871 controls. The discovery phase involved a genome-wide association scan of 867 affected individuals and 1953 controls from Scotland, followed by genotyping and testing 4347 highest ranking or candidate single nucleotide polymorphisms (SNPs) in independent sets of cases (1000) and controls (2912) of Dutch and British origin. None of the SNPs selected reached a Bonferroni-corrected threshold for significance (P < 1.27 × 10(-7)). The strongest association, for rs12960119 (P = 1.58 × 10(-7)) located within an intron of the SS18 gene. Further testing was carried out in independent case-control series from London (846 cases) and Croatia (120 cases). The combined meta-analysis identified one association reaching genome-wide significance for rs267738 (OR = 1.29, P = 2.11 × 10(-8)), a missense coding SNP and eQTL for CERS2 encoding the protein ceramide synthase 2. Several of the top signals showing suggestive significance in the combined meta-analysis encompassed genes with a documented role in cell adhesion or migration, including SS18, TIAM1, TSTA3 and LDB2, which warrant further investigation. This first genetic association study of RRD supports a polygenic component underlying RRD risk since 27.4% of the underlying RRD liability could be explained by the collective additive effects of the genotyped SNP from the discovery genome-wide scan.

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Year:  2013        PMID: 23585552     DOI: 10.1093/hmg/ddt169

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  15 in total

Review 1.  Genome-wide association studies: applications and insights gained in Ophthalmology.

Authors:  A Chandra; D Mitry; A Wright; H Campbell; D G Charteris
Journal:  Eye (Lond)       Date:  2014-06-27       Impact factor: 3.775

Review 2.  Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research.

Authors:  Vijender Chaitankar; Gökhan Karakülah; Rinki Ratnapriya; Felipe O Giuste; Matthew J Brooks; Anand Swaroop
Journal:  Prog Retin Eye Res       Date:  2016-06-11       Impact factor: 21.198

3.  Insights into the genetic basis of retinal detachment.

Authors:  Thibaud S Boutin; David G Charteris; Aman Chandra; Susan Campbell; Caroline Hayward; Archie Campbell; Priyanka Nandakumar; David Hinds; Danny Mitry; Veronique Vitart
Journal:  Hum Mol Genet       Date:  2020-03-13       Impact factor: 6.150

4.  Ethnic variation in rhegmatogenous retinal detachments.

Authors:  A Chandra; P Banerjee; D Davis; D Charteris
Journal:  Eye (Lond)       Date:  2015-03-27       Impact factor: 3.775

5.  Genome-Wide Gene-Diabetes and Gene-Obesity Interaction Scan in 8,255 Cases and 11,900 Controls from PanScan and PanC4 Consortia.

Authors:  Hongwei Tang; Lai Jiang; Donghui Li; Peter Kraft; Peng Wei; Rachael Z Stolzenberg-Solomon; Alan A Arslan; Laura E Beane Freeman; Paige M Bracci; Paul Brennan; Federico Canzian; Mengmeng Du; Steven Gallinger; Graham G Giles; Phyllis J Goodman; Charles Kooperberg; Loïc Le Marchand; Rachel E Neale; Xiao-Ou Shu; Kala Visvanathan; Emily White; Wei Zheng; Demetrius Albanes; Gabriella Andreotti; Ana Babic; William R Bamlet; Sonja I Berndt; Amanda Blackford; Bas Bueno-de-Mesquita; Julie E Buring; Daniele Campa; Stephen J Chanock; Erica Childs; Eric J Duell; Charles Fuchs; J Michael Gaziano; Michael Goggins; Patricia Hartge; Manal H Hassam; Elizabeth A Holly; Robert N Hoover; Rayjean J Hung; Robert C Kurtz; I-Min Lee; Núria Malats; Roger L Milne; Kimmie Ng; Ann L Oberg; Irene Orlow; Ulrike Peters; Miquel Porta; Kari G Rabe; Nathaniel Rothman; Ghislaine Scelo; Howard D Sesso; Debra T Silverman; Ian M Thompson; Anne Tjønneland; Antonia Trichopoulou; Jean Wactawski-Wende; Nicolas Wentzensen; Lynne R Wilkens; Herbert Yu; Anne Zeleniuch-Jacquotte; Laufey T Amundadottir; Eric J Jacobs; Gloria M Petersen; Brian M Wolpin; Harvey A Risch; Nilanjan Chatterjee; Alison P Klein
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2020-06-16       Impact factor: 4.254

6.  Kuwaiti population subgroup of nomadic Bedouin ancestry-Whole genome sequence and analysis.

Authors:  Sumi Elsa John; Gaurav Thareja; Prashantha Hebbar; Kazem Behbehani; Thangavel Alphonse Thanaraj; Osama Alsmadi
Journal:  Genom Data       Date:  2014-12-18

7.  Evaluation of DNA variants associated with androgenetic alopecia and their potential to predict male pattern baldness.

Authors:  Magdalena Marcińska; Ewelina Pośpiech; Sarah Abidi; Jeppe Dyrberg Andersen; Margreet van den Berge; Ángel Carracedo; Mayra Eduardoff; Anna Marczakiewicz-Lustig; Niels Morling; Titia Sijen; Małgorzata Skowron; Jens Söchtig; Denise Syndercombe-Court; Natalie Weiler; Peter M Schneider; David Ballard; Claus Børsting; Walther Parson; Chris Phillips; Wojciech Branicki
Journal:  PLoS One       Date:  2015-05-22       Impact factor: 3.240

8.  Reduced ceramide synthase 2 activity causes progressive myoclonic epilepsy.

Authors:  Mai-Britt Mosbech; Anne S B Olsen; Ditte Neess; Oshrit Ben-David; Laura L Klitten; Jan Larsen; Anne Sabers; John Vissing; Jørgen E Nielsen; Lis Hasholt; Andres D Klein; Michael M Tsoory; Helle Hjalgrim; Niels Tommerup; Anthony H Futerman; Rikke S Møller; Nils J Færgeman
Journal:  Ann Clin Transl Neurol       Date:  2014-01-13       Impact factor: 4.511

9.  Gene expression changes in the retina following subretinal injection of human neural progenitor cells into a rodent model for retinal degeneration.

Authors:  Melissa K Jones; Bin Lu; Mehrnoosh Saghizadeh; Shaomei Wang
Journal:  Mol Vis       Date:  2016-05-16       Impact factor: 2.367

10.  Novel Myopia Genes and Pathways Identified From Syndromic Forms of Myopia.

Authors:  D Ian Flitcroft; James Loughman; Christine F Wildsoet; Cathy Williams; Jeremy A Guggenheim
Journal:  Invest Ophthalmol Vis Sci       Date:  2018-01-01       Impact factor: 4.799

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