Literature DB >> 31816047

Insights into the genetic basis of retinal detachment.

Thibaud S Boutin1, David G Charteris2, Aman Chandra3,4, Susan Campbell1, Caroline Hayward1, Archie Campbell5, Priyanka Nandakumar6, David Hinds6, Danny Mitry7, Veronique Vitart1.   

Abstract

Retinal detachment (RD) is a serious and common condition, but genetic studies to date have been hampered by the small size of the assembled cohorts. In the UK Biobank data set, where RD was ascertained by self-report or hospital records, genetic correlations between RD and high myopia or cataract operation were, respectively, 0.46 (SE = 0.08) and 0.44 (SE = 0.07). These correlations are consistent with known epidemiological associations. Through meta-analysis of genome-wide association studies using UK Biobank RD cases (N = 3 977) and two cohorts, each comprising ~1 000 clinically ascertained rhegmatogenous RD patients, we uncovered 11 genome-wide significant association signals. These are near or within ZC3H11B, BMP3, COL22A1, DLG5, PLCE1, EFEMP2, TYR, FAT3, TRIM29, COL2A1 and LOXL1. Replication in the 23andMe data set, where RD is self-reported by participants, firmly establishes six RD risk loci: FAT3, COL22A1, TYR, BMP3, ZC3H11B and PLCE1. Based on the genetic associations with eye traits described to date, the first two specifically impact risk of a RD, whereas the last four point to shared aetiologies with macular condition, myopia and glaucoma. Fine-mapping prioritized the lead common missense variant (TYR S192Y) as causal variant at the TYR locus and a small set of credible causal variants at the FAT3 locus. The larger study size presented here, enabled by resources linked to health records or self-report, provides novel insights into RD aetiology and underlying pathological pathways.
© The Author(s) 2019. Published by Oxford University Press.

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Year:  2020        PMID: 31816047      PMCID: PMC7068119          DOI: 10.1093/hmg/ddz294

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  71 in total

1.  Genetic risk of rhegmatogenous retinal detachment: a familial aggregation study.

Authors:  Sioe Lie Go; Carel B Hoyng; Caroline C W Klaver
Journal:  Arch Ophthalmol       Date:  2005-09

2.  Fat3 and Ena/VASP proteins influence the emergence of asymmetric cell morphology in the developing retina.

Authors:  Alexandra Krol; Steven J Henle; Lisa V Goodrich
Journal:  Development       Date:  2016-04-27       Impact factor: 6.868

Review 3.  Retinal detachment.

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4.  The influence of refractive error and lattice degeneration on the incidence of retinal detachment.

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5.  Population-based estimate of the sibling recurrence risk ratio for rhegmatogenous retinal detachment.

Authors:  Danny Mitry; Linda Williams; David G Charteris; Brian W Fleck; Alan F Wright; Harry Campbell
Journal:  Invest Ophthalmol Vis Sci       Date:  2011-04-20       Impact factor: 4.799

6.  Knockdown of col22a1 gene in zebrafish induces a muscular dystrophy by disruption of the myotendinous junction.

Authors:  Benjamin Charvet; Alexandre Guiraud; Marilyne Malbouyres; Daniela Zwolanek; Emilie Guillon; Sandrine Bretaud; Catherine Monnot; Jörg Schulze; Hannah L Bader; Bruno Allard; Manuel Koch; Florence Ruggiero
Journal:  Development       Date:  2013-10-16       Impact factor: 6.868

7.  Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.

Authors:  Anubha Mahajan; Daniel Taliun; Matthias Thurner; Neil R Robertson; Jason M Torres; N William Rayner; Anthony J Payne; Valgerdur Steinthorsdottir; Robert A Scott; Niels Grarup; James P Cook; Ellen M Schmidt; Matthias Wuttke; Chloé Sarnowski; Reedik Mägi; Jana Nano; Christian Gieger; Stella Trompet; Cécile Lecoeur; Michael H Preuss; Bram Peter Prins; Xiuqing Guo; Lawrence F Bielak; Jennifer E Below; Donald W Bowden; John Campbell Chambers; Young Jin Kim; Maggie C Y Ng; Lauren E Petty; Xueling Sim; Weihua Zhang; Amanda J Bennett; Jette Bork-Jensen; Chad M Brummett; Mickaël Canouil; Kai-Uwe Ec Kardt; Krista Fischer; Sharon L R Kardia; Florian Kronenberg; Kristi Läll; Ching-Ti Liu; Adam E Locke; Jian'an Luan; Ioanna Ntalla; Vibe Nylander; Sebastian Schönherr; Claudia Schurmann; Loïc Yengo; Erwin P Bottinger; Ivan Brandslund; Cramer Christensen; George Dedoussis; Jose C Florez; Ian Ford; Oscar H Franco; Timothy M Frayling; Vilmantas Giedraitis; Sophie Hackinger; Andrew T Hattersley; Christian Herder; M Arfan Ikram; Martin Ingelsson; Marit E Jørgensen; Torben Jørgensen; Jennifer Kriebel; Johanna Kuusisto; Symen Ligthart; Cecilia M Lindgren; Allan Linneberg; Valeriya Lyssenko; Vasiliki Mamakou; Thomas Meitinger; Karen L Mohlke; Andrew D Morris; Girish Nadkarni; James S Pankow; Annette Peters; Naveed Sattar; Alena Stančáková; Konstantin Strauch; Kent D Taylor; Barbara Thorand; Gudmar Thorleifsson; Unnur Thorsteinsdottir; Jaakko Tuomilehto; Daniel R Witte; Josée Dupuis; Patricia A Peyser; Eleftheria Zeggini; Ruth J F Loos; Philippe Froguel; Erik Ingelsson; Lars Lind; Leif Groop; Markku Laakso; Francis S Collins; J Wouter Jukema; Colin N A Palmer; Harald Grallert; Andres Metspalu; Abbas Dehghan; Anna Köttgen; Goncalo R Abecasis; James B Meigs; Jerome I Rotter; Jonathan Marchini; Oluf Pedersen; Torben Hansen; Claudia Langenberg; Nicholas J Wareham; Kari Stefansson; Anna L Gloyn; Andrew P Morris; Michael Boehnke; Mark I McCarthy
Journal:  Nat Genet       Date:  2018-10-08       Impact factor: 38.330

8.  PhenoScanner: a database of human genotype-phenotype associations.

Authors:  James R Staley; James Blackshaw; Mihir A Kamat; Steve Ellis; Praveen Surendran; Benjamin B Sun; Dirk S Paul; Daniel Freitag; Stephen Burgess; John Danesh; Robin Young; Adam S Butterworth
Journal:  Bioinformatics       Date:  2016-06-17       Impact factor: 6.937

9.  Accuracy and Utility of Self-report of Refractive Error.

Authors:  Phillippa M Cumberland; Antonietta Chianca; Jugnoo S Rahi
Journal:  JAMA Ophthalmol       Date:  2016-07-01       Impact factor: 7.389

10.  A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.

Authors:  Hélène Choquet; Seyyedhassan Paylakhi; Stephen C Kneeland; Khanh K Thai; Thomas J Hoffmann; Jie Yin; Mark N Kvale; Yambazi Banda; Nicholas G Tolman; Pete A Williams; Catherine Schaefer; Ronald B Melles; Neil Risch; Simon W M John; K Saidas Nair; Eric Jorgenson
Journal:  Nat Commun       Date:  2018-06-11       Impact factor: 14.919

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  7 in total

1.  Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.

Authors:  Xikun Han; Jue-Sheng Ong; Jiyuan An; Jamie E Craig; Puya Gharahkhani; Alex W Hewitt; Stuart MacGregor
Journal:  JAMA Ophthalmol       Date:  2020-06-01       Impact factor: 7.389

2.  High-Fat Diet Alters the Retinal Pigment Epithelium and Choroidal Transcriptome in the Absence of Gut Microbiota.

Authors:  Jason Xiao; Bingqing Xie; David Dao; Melanie Spedale; Mark D'Souza; Betty Theriault; Seenu M Hariprasad; Dinanath Sulakhe; Eugene B Chang; Dimitra Skondra
Journal:  Cells       Date:  2022-06-30       Impact factor: 7.666

3.  Common variants in SOX-2 and congenital cataract genes contribute to age-related nuclear cataract.

Authors:  Ekaterina Yonova-Doing; Wanting Zhao; Robert P Igo; Chaolong Wang; Periasamy Sundaresan; Kristine E Lee; Gyungah R Jun; Alexessander Couto Alves; Xiaoran Chai; Anita S Y Chan; Mei Chin Lee; Allan Fong; Ava G Tan; Chiea Chuen Khor; Emily Y Chew; Pirro G Hysi; Qiao Fan; Jacqueline Chua; Jaeyoon Chung; Jiemin Liao; Johanna M Colijn; Kathryn P Burdon; Lars G Fritsche; Maria K Swift; Maryam H Hilmy; Miao Ling Chee; Milly Tedja; Pieter W M Bonnemaijer; Preeti Gupta; Queenie S Tan; Zheng Li; Eranga N Vithana; Ravilla D Ravindran; Soon-Phaik Chee; Yuan Shi; Wenting Liu; Xinyi Su; Xueling Sim; Yang Shen; Ya Xing Wang; Hengtong Li; Yih-Chung Tham; Yik Ying Teo; Tin Aung; Kerrin S Small; Paul Mitchell; Jost B Jonas; Tien Yin Wong; Astrid E Fletcher; Caroline C W Klaver; Barbara E K Klein; Jie Jin Wang; Sudha K Iyengar; Christopher J Hammond; Ching-Yu Cheng
Journal:  Commun Biol       Date:  2020-12-11

Review 4.  IMI 2021 Yearly Digest.

Authors:  Monica Jong; Jost B Jonas; James S Wolffsohn; David A Berntsen; Pauline Cho; Danielle Clarkson-Townsend; Daniel I Flitcroft; Kate L Gifford; Annechien E G Haarman; Machelle T Pardue; Kathryn Richdale; Padmaja Sankaridurg; Milly S Tedja; Christine F Wildsoet; Joan E Bailey-Wilson; Jeremy A Guggenheim; Christopher J Hammond; Jaakko Kaprio; Stuart MacGregor; David A Mackey; Anthony M Musolf; Caroline C W Klaver; Virginie J M Verhoeven; Veronique Vitart; Earl L Smith
Journal:  Invest Ophthalmol Vis Sci       Date:  2021-04-28       Impact factor: 4.799

Review 5.  The Genetic Architecture of Non-Syndromic Rhegmatogenous Retinal Detachment.

Authors:  Malik Moledina; David G Charteris; Aman Chandra
Journal:  Genes (Basel)       Date:  2022-09-19       Impact factor: 4.141

6.  The expression of cytokines in aqueous humor of high myopic patients with cataracts.

Authors:  Jing Shang Zhang; Jin Da Wang; Gu Yu Zhu; Jing Li; Ying Xiong; Mayinuer Yusufu; Hai Long He; Xiu Li Sun; Tian Ju; Yong Tao; Shou Zhi He; Xiu Hua Wan
Journal:  Mol Vis       Date:  2020-03-05       Impact factor: 2.367

7.  A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.

Authors:  Hélène Choquet; Ronald B Melles; Deepti Anand; Jie Yin; Gabriel Cuellar-Partida; Wei Wang; Thomas J Hoffmann; K Saidas Nair; Pirro G Hysi; Salil A Lachke; Eric Jorgenson
Journal:  Nat Commun       Date:  2021-06-14       Impact factor: 14.919

  7 in total

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