Literature DB >> 23584951

Experimental and modelling investigation of monolayer development with clustering.

Matthew J Simpson1, Benjamin J Binder, Parvathi Haridas, Benjamin K Wood, Katrina K Treloar, D L Sean McElwain, Ruth E Baker.   

Abstract

Standard differential equation-based models of collective cell behaviour, such as the logistic growth model, invoke a mean-field assumption which is equivalent to assuming that individuals within the population interact with each other in proportion to the average population density. Implementing such assumptions implies that the dynamics of the system are unaffected by spatial structure, such as the formation of patches or clusters within the population. Recent theoretical developments have introduced a class of models, known as moment dynamics models, which aim to account for the dynamics of individuals, pairs of individuals, triplets of individuals, and so on. Such models enable us to describe the dynamics of populations with clustering, however, little progress has been made with regard to applying moment dynamics models to experimental data. Here, we report new experimental results describing the formation of a monolayer of cells using two different cell types: 3T3 fibroblast cells and MDA MB 231 breast cancer cells. Our analysis indicates that the 3T3 fibroblast cells are relatively motile and we observe that the 3T3 fibroblast monolayer forms without clustering. Alternatively, the MDA MB 231 cells are less motile and we observe that the MDA MB 231 monolayer formation is associated with significant clustering. We calibrate a moment dynamics model and a standard mean-field model to both data sets. Our results indicate that the mean-field and moment dynamics models provide similar descriptions of the 3T3 fibroblast monolayer formation whereas these two models give very different predictions for the MDA MD 231 monolayer formation. These outcomes indicate that standard mean-field models of collective cell behaviour are not always appropriate and that care ought to be exercised when implementing such a model.

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Year:  2013        PMID: 23584951     DOI: 10.1007/s11538-013-9839-0

Source DB:  PubMed          Journal:  Bull Math Biol        ISSN: 0092-8240            Impact factor:   1.758


  10 in total

1.  Optimal Quantification of Contact Inhibition in Cell Populations.

Authors:  David J Warne; Ruth E Baker; Matthew J Simpson
Journal:  Biophys J       Date:  2017-10-13       Impact factor: 4.033

2.  Accurate and efficient discretizations for stochastic models providing near agent-based spatial resolution at low computational cost.

Authors:  Nabil T Fadai; Ruth E Baker; Matthew J Simpson
Journal:  J R Soc Interface       Date:  2019-10-23       Impact factor: 4.118

3.  Spectral analysis of pair-correlation bandwidth: application to cell biology images.

Authors:  Benjamin J Binder; Matthew J Simpson
Journal:  R Soc Open Sci       Date:  2015-02-11       Impact factor: 2.963

4.  Assessing the role of spatial correlations during collective cell spreading.

Authors:  Katrina K Treloar; Matthew J Simpson; Benjamin J Binder; D L Sean McElwain; Ruth E Baker
Journal:  Sci Rep       Date:  2014-07-16       Impact factor: 4.379

5.  Spatial structure arising from neighbour-dependent bias in collective cell movement.

Authors:  Rachelle N Binny; Parvathi Haridas; Alex James; Richard Law; Matthew J Simpson; Michael J Plank
Journal:  PeerJ       Date:  2016-02-15       Impact factor: 2.984

6.  Quantifying the roles of random motility and directed motility using advection-diffusion theory for a 3T3 fibroblast cell migration assay stimulated with an electric field.

Authors:  Matthew J Simpson; Kai-Yin Lo; Yung-Shin Sun
Journal:  BMC Syst Biol       Date:  2017-03-17

7.  The impact of experimental design choices on parameter inference for models of growing cell colonies.

Authors:  Andrew Parker; Matthew J Simpson; Ruth E Baker
Journal:  R Soc Open Sci       Date:  2018-08-29       Impact factor: 2.963

8.  Learning differential equation models from stochastic agent-based model simulations.

Authors:  John T Nardini; Ruth E Baker; Matthew J Simpson; Kevin B Flores
Journal:  J R Soc Interface       Date:  2021-03-17       Impact factor: 4.118

9.  Mechanical properties of growing melanocytic nevi and the progression to melanoma.

Authors:  Alessandro Taloni; Alexander A Alemi; Emilio Ciusani; James P Sethna; Stefano Zapperi; Caterina A M La Porta
Journal:  PLoS One       Date:  2014-04-07       Impact factor: 3.240

10.  Do pioneer cells exist?

Authors:  Matthew J Simpson; Parvathi Haridas; D L Sean McElwain
Journal:  PLoS One       Date:  2014-01-21       Impact factor: 3.240

  10 in total

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