Literature DB >> 23580182

The dynamic pathway of nuclear RNA in eukaryotes.

Jonathan Sheinberger1, Yaron Shav-Tal.   

Abstract

The passage of mRNA molecules from the site of synthesis, through the nucleoplasm and the nuclear pore, en route to the cytoplasm, might appear straightforward. Nonetheless, several decades of detailed examination of this pathway, from high resolution electron microscopy in fixed specimens, through the development of immuno-detection techniques and fluorescence toolkits, to the current era of live-cell imaging, show this to be an eventful journey. In addition to mRNAs, several species of noncoding RNAs travel and function in the nucleus, some being retained within throughout their lifetime. This review will highlight the nucleoplasmic paths taken by mRNAs and noncoding RNAs in eukaryotic cells with special focus on live-cell data and in concurrence with the biophysical nature of the nucleus.

Keywords:  RNA dynamics; inter-chromatin; live-cell imaging; mRNA export; nuceloplasm

Mesh:

Substances:

Year:  2013        PMID: 23580182      PMCID: PMC3720750          DOI: 10.4161/nucl.24434

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  158 in total

1.  DNA microarray analysis of gene expression in endothelial cells in response to 24-h shear stress.

Authors:  B P Chen; Y S Li; Y Zhao; K D Chen; S Li; J Lao; S Yuan; J Y Shyy; S Chien
Journal:  Physiol Genomics       Date:  2001-10-10       Impact factor: 3.107

Review 2.  Photobleaching microscopy reveals the dynamics of mRNA-binding proteins inside live cell nuclei.

Authors:  José Braga; José Rino; Maria Carmo-Fonseca
Journal:  Prog Mol Subcell Biol       Date:  2004

3.  Imaging of single-molecule translocation through nuclear pore complexes.

Authors:  Weidong Yang; Jeff Gelles; Siegfried M Musser
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-11       Impact factor: 11.205

Review 4.  Dynamics and kinetics of nucleo-cytoplasmic mRNA export.

Authors:  Amir Mor; Yaron Shav-Tal
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-09-15       Impact factor: 9.957

5.  Structural organization of mRNA complexes with major core mRNP protein YB-1.

Authors:  Maxim A Skabkin; Olga I Kiselyova; Konstantin G Chernov; Alexey V Sorokin; Evgeniy V Dubrovin; Igor V Yaminsky; Victor D Vasiliev; Lev P Ovchinnikov
Journal:  Nucleic Acids Res       Date:  2004-10-19       Impact factor: 16.971

6.  Nuclear export of single native mRNA molecules observed by light sheet fluorescence microscopy.

Authors:  Jan Peter Siebrasse; Tim Kaminski; Ulrich Kubitscheck
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-21       Impact factor: 11.205

Review 7.  Keeping mRNPs in check during assembly and nuclear export.

Authors:  Evelina Tutucci; Françoise Stutz
Journal:  Nat Rev Mol Cell Biol       Date:  2011-06       Impact factor: 94.444

Review 8.  Nuclear export dynamics of RNA-protein complexes.

Authors:  David Grünwald; Robert H Singer; Michael Rout
Journal:  Nature       Date:  2011-07-20       Impact factor: 49.962

Review 9.  Application of live-cell RNA imaging techniques to the study of retroviral RNA trafficking.

Authors:  Darrin V Bann; Leslie J Parent
Journal:  Viruses       Date:  2012-06-08       Impact factor: 5.048

10.  Translocation of RNA-coated gold particles through the nuclear pores of oocytes.

Authors:  S I Dworetzky; C M Feldherr
Journal:  J Cell Biol       Date:  1988-03       Impact factor: 10.539

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  5 in total

Review 1.  Zooming in on single active genes in living mammalian cells.

Authors:  Sharon Yunger; Alon Kalo; Pinhas Kafri; Jonathan Sheinberger; Erez Lavi; Noa Neufeld; Yaron Shav-Tal
Journal:  Histochem Cell Biol       Date:  2013-06-09       Impact factor: 4.304

Review 2.  Control of mammalian gene expression by selective mRNA export.

Authors:  Vihandha O Wickramasinghe; Ronald A Laskey
Journal:  Nat Rev Mol Cell Biol       Date:  2015-06-17       Impact factor: 94.444

Review 3.  Regulation of mRNA trafficking by nuclear pore complexes.

Authors:  Amandine Bonnet; Benoit Palancade
Journal:  Genes (Basel)       Date:  2014-09-02       Impact factor: 4.096

4.  Quantitative Microscopy Reveals Stepwise Alteration of Chromatin Structure during Herpesvirus Infection.

Authors:  Vesa Aho; Elina Mäntylä; Axel Ekman; Satu Hakanen; Salla Mattola; Jian-Hua Chen; Venera Weinhardt; Visa Ruokolainen; Beate Sodeik; Carolyn Larabell; Maija Vihinen-Ranta
Journal:  Viruses       Date:  2019-10-11       Impact factor: 5.818

5.  Dbp5 associates with RNA-bound Mex67 and Nab2 and its localization at the nuclear pore complex is sufficient for mRNP export and cell viability.

Authors:  Rebecca L Adams; Susan R Wente
Journal:  PLoS Genet       Date:  2020-10-01       Impact factor: 5.917

  5 in total

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