Literature DB >> 23560556

Distinct structural and redox properties of the heme active site in bacterial dye decolorizing peroxidase-type peroxidases from two subfamilies: resonance Raman and electrochemical study.

Murat Sezer1, Ana Santos, Patrycja Kielb, Tiago Pinto, Ligia O Martins, Smilja Todorovic.   

Abstract

Spectroscopic data of dye decolorizing peroxidases (DyPs) from Bacillus subtilis (BsDyP), an A subfamily member, and Pseudomonas putida (PpDyP), a B subfamily enzyme, reveal distinct heme coordination patterns of the respective active sites. In solution, both enzymes show a heterogeneous spin population, with the six-coordinated low-spin state being the most populated in the former and the five-coordinated quantum mechanically mixed-spin state in the latter. We ascribe the poor catalytic activity of BsDyP to the presence of a catalytically incompetent six-coordinated low-spin population. The spin populations of the two DyPs are sensitively dependent on the pH, temperature, and physical, i.e., solution versus crystal versus immobilized, state of the enzymes. We observe a redox potential for the Fe(2+)/Fe(3+) couple in BsDyP (-40 mV) at pH 7.6 substantially more positive than those reported for the majority of other peroxidases, including PpDyP (-260 mV). Furthermore, we evaluate the potential of the studied enzymes for biotechnological applications on the basis of electrochemical and spectroelectrochemical data.

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Year:  2013        PMID: 23560556     DOI: 10.1021/bi301630a

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

1.  Characterization of Dye-decolorizing Peroxidase (DyP) from Thermomonospora curvata Reveals Unique Catalytic Properties of A-type DyPs.

Authors:  Chao Chen; Ruben Shrestha; Kaimin Jia; Philip F Gao; Brian V Geisbrecht; Stefan H Bossmann; Jishu Shi; Ping Li
Journal:  J Biol Chem       Date:  2015-07-23       Impact factor: 5.157

Review 2.  DyP-type peroxidases: a promising and versatile class of enzymes.

Authors:  Dana I Colpa; Marco W Fraaije; Edwin van Bloois
Journal:  J Ind Microbiol Biotechnol       Date:  2013-11-09       Impact factor: 3.346

3.  A novel bacterial class V dye-decolourizing peroxidase from the extremophile Deinococcus radiodurans: cloning, expression optimization, purification, crystallization, initial characterization and X-ray diffraction analysis.

Authors:  Kelly Stefany Tuna Frade; Andreia Cecília Pimenta Fernandes; Celia Marisa Silveira; Carlos Frazão; Elin Moe
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-06-26       Impact factor: 1.056

4.  Mutational and structural analysis of an ancestral fungal dye-decolorizing peroxidase.

Authors:  Ulises A Zitare; Mohamed H Habib; Henriette Rozeboom; Maria L Mascotti; Smilja Todorovic; Marco W Fraaije
Journal:  FEBS J       Date:  2021-01-08       Impact factor: 5.542

Review 5.  Understanding molecular enzymology of porphyrin-binding α + β barrel proteins - One fold, multiple functions.

Authors:  Stefan Hofbauer; Vera Pfanzagl; Hanna Michlits; Daniel Schmidt; Christian Obinger; Paul G Furtmüller
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2020-09-04       Impact factor: 3.036

Review 6.  In Situ Spectroelectrochemical Investigations of Electrode-Confined Electron-Transferring Proteins and Redox Enzymes.

Authors:  Daniel H Murgida
Journal:  ACS Omega       Date:  2021-01-27

7.  Cryo-EM structure of Mycobacterium smegmatis DyP-loaded encapsulin.

Authors:  Yanting Tang; An Mu; Yuying Zhang; Shan Zhou; Weiwei Wang; Yuezheng Lai; Xiaoting Zhou; Fengjiang Liu; Xiuna Yang; Hongri Gong; Quan Wang; Zihe Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-20       Impact factor: 11.205

8.  Photoreduction and validation of haem-ligand intermediate states in protein crystals by in situ single-crystal spectroscopy and diffraction.

Authors:  Demet Kekilli; Tadeo Moreno-Chicano; Amanda K Chaplin; Sam Horrell; Florian S N Dworkowski; Jonathan A R Worrall; Richard W Strange; Michael A Hough
Journal:  IUCrJ       Date:  2017-04-10       Impact factor: 4.769

9.  Comparing Ligninolytic Capabilities of Bacterial and Fungal Dye-Decolorizing Peroxidases and Class-II Peroxidase-Catalases.

Authors:  Dolores Linde; Iván Ayuso-Fernández; Marcos Laloux; José E Aguiar-Cervera; Antonio L de Lacey; Francisco J Ruiz-Dueñas; Angel T Martínez
Journal:  Int J Mol Sci       Date:  2021-03-05       Impact factor: 5.923

Review 10.  Chlorite dismutases - a heme enzyme family for use in bioremediation and generation of molecular oxygen.

Authors:  Stefan Hofbauer; Irene Schaffner; Paul G Furtmüller; Christian Obinger
Journal:  Biotechnol J       Date:  2014-02-12       Impact factor: 4.677

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