Flanking sequences of Xenopus 5 S RNA genes determine differential inhibition of transcription by H1 histone in vitro. Mitotic phosphorylation of H1 decreases its inhibitory power.

In Xenopus laevis chromatin histone H1 selectively inhibits the transcription of oocyte 5 S RNA genes while not affecting the transcription of somatic 5 S RNA genes (Schlissel, M. S., and Brown, D. D. (1984) Cell 37, 903-913; Wolffe, A. P. (1989) EMBO J. 8, 527-537). To explore possible mechanisms of this specific action of H1 we analyzed the in vitro transcription of H1.DNA complexes. We found that the selective inhibitory effect of H1 in this system depends entirely on the flanking sequences of 5 S RNA genes and not on the coding sequence itself. At an H1:DNA ratio above approximately 0.4, H1 strongly inhibited the transcription of the gene surrounded by the A + T-rich flanks characteristic of oocyte 5 S RNA genes, whereas it did not prevent transcription of the genes surrounded by G + C-rich somatic-type flanks. This was reflected by strongly preferential binding of H1 to isolated 5 S RNA genes contained within A + T-rich flanks. We also showed that superphosphorylation of H1 with growth-associated (mitotic) H1 kinase invariably decreased H1's ability to inhibit transcription in an in vitro system.