Literature DB >> 23547293

Targeted proteomics.

Vivien Marx.   

Abstract

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Year:  2013        PMID： 23547293     DOI： 10.1038/nmeth.2285

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  8 in total

1.  Mass spectrometric quantitation of peptides and proteins using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA).

Authors:  N Leigh Anderson; Norman G Anderson; Lee R Haines; Darryl B Hardie; Robert W Olafson; Terry W Pearson
Journal:  J Proteome Res       Date:  2004 Mar-Apr       Impact factor: 4.466

2.  Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra.

Authors:  John D Venable; Meng-Qiu Dong; James Wohlschlegel; Andrew Dillin; John R Yates
Journal:  Nat Methods       Date:  2004-09-29       Impact factor: 28.547

3.  Computational prediction of proteotypic peptides for quantitative proteomics.

Authors:  Parag Mallick; Markus Schirle; Sharon S Chen; Mark R Flory; Hookeun Lee; Daniel Martin; Jeffrey Ranish; Brian Raught; Robert Schmitt; Thilo Werner; Bernhard Kuster; Ruedi Aebersold
Journal:  Nat Biotechnol       Date:  2006-12-31       Impact factor: 54.908

4.  Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma.

Authors:  Terri A Addona; Susan E Abbatiello; Birgit Schilling; Steven J Skates; D R Mani; David M Bunk; Clifford H Spiegelman; Lisa J Zimmerman; Amy-Joan L Ham; Hasmik Keshishian; Steven C Hall; Simon Allen; Ronald K Blackman; Christoph H Borchers; Charles Buck; Helene L Cardasis; Michael P Cusack; Nathan G Dodder; Bradford W Gibson; Jason M Held; Tara Hiltke; Angela Jackson; Eric B Johansen; Christopher R Kinsinger; Jing Li; Mehdi Mesri; Thomas A Neubert; Richard K Niles; Trenton C Pulsipher; David Ransohoff; Henry Rodriguez; Paul A Rudnick; Derek Smith; David L Tabb; Tony J Tegeler; Asokan M Variyath; Lorenzo J Vega-Montoto; Asa Wahlander; Sofia Waldemarson; Mu Wang; Jeffrey R Whiteaker; Lei Zhao; N Leigh Anderson; Susan J Fisher; Daniel C Liebler; Amanda G Paulovich; Fred E Regnier; Paul Tempst; Steven A Carr
Journal:  Nat Biotechnol       Date:  2009-06-28       Impact factor: 54.908

5.  Skyline: an open source document editor for creating and analyzing targeted proteomics experiments.

Authors:  Brendan MacLean; Daniela M Tomazela; Nicholas Shulman; Matthew Chambers; Gregory L Finney; Barbara Frewen; Randall Kern; David L Tabb; Daniel C Liebler; Michael J MacCoss
Journal:  Bioinformatics       Date:  2010-02-09       Impact factor: 6.937

6.  Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics.

Authors:  Paola Picotti; Bernd Bodenmiller; Lukas N Mueller; Bruno Domon; Ruedi Aebersold
Journal:  Cell       Date:  2009-08-06       Impact factor: 41.582

7.  Preparation of stable isotope-incorporated peptide internal standards for field desorption mass spectrometry quantification of peptides in biologic tissue.

Authors:  D M Desiderio; M Kai
Journal:  Biomed Mass Spectrom       Date:  1983-08

8.  Rapid empirical discovery of optimal peptides for targeted proteomics.

Authors:  Andrew B Stergachis; Brendan MacLean; Kristen Lee; John A Stamatoyannopoulos; Michael J MacCoss
Journal:  Nat Methods       Date:  2011-11-06       Impact factor: 28.547
  8 in total
  61 in total

1.  Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system.

Authors:  Ben C Collins; Ludovic C Gillet; George Rosenberger; Hannes L Röst; Anton Vichalkovski; Matthias Gstaiger; Ruedi Aebersold
Journal:  Nat Methods       Date:  2013-10-27       Impact factor: 28.547

2.  Using Data Independent Acquisition (DIA) to Model High-responding Peptides for Targeted Proteomics Experiments.

Authors:  Brian C Searle; Jarrett D Egertson; James G Bollinger; Andrew B Stergachis; Michael J MacCoss
Journal:  Mol Cell Proteomics       Date:  2015-06-22       Impact factor: 5.911

3.  Parallel acquisition of 3D-HA(CA)NH and 3D-HACACO spectra.

Authors:  Jithender G Reddy; Ramakrishna V Hosur
Journal:  J Biomol NMR       Date:  2013-05-05       Impact factor: 2.835

4.  A targeted quantitative proteomics strategy for global kinome profiling of cancer cells and tissues.

Authors:  Yongsheng Xiao; Lei Guo; Yinsheng Wang
Journal:  Mol Cell Proteomics       Date:  2014-02-11       Impact factor: 5.911

5.  HOTMAQ: A Multiplexed Absolute Quantification Method for Targeted Proteomics.

Authors:  Xiaofang Zhong; Qinying Yu; Fengfei Ma; Dustin C Frost; Lei Lu; Zhengwei Chen; Henrik Zetterberg; Cynthia Carlsson; Ozioma Okonkwo; Lingjun Li
Journal:  Anal Chem       Date:  2019-01-18       Impact factor: 6.986

6.  A Targeted Proteomic Approach for Heat Shock Proteins Reveals DNAJB4 as a Suppressor for Melanoma Metastasis.

Authors:  Weili Miao; Lin Li; Yinsheng Wang
Journal:  Anal Chem       Date:  2018-05-11       Impact factor: 6.986

7.  Highly Multiplex Targeted Proteomics Enabled by Real-Time Chromatographic Alignment.

Authors:  Philip M Remes; Ping Yip; Michael J MacCoss
Journal:  Anal Chem       Date:  2020-08-12       Impact factor: 6.986

8.  Selected reaction monitoring to determine protein abundance in Arabidopsis using the Arabidopsis proteotypic predictor.

Authors:  Nicolas L Taylor; Ricarda Fenske; Ian Castleden; Tiago Tomaz; Clark J Nelson; A Harvey Millar
Journal:  Plant Physiol       Date:  2013-12-02       Impact factor: 8.340

9.  MASP1, THBS1, GPLD1 and ApoA-IV are novel biomarkers associated with prediabetes: the KORA F4 study.

Authors:  Christine von Toerne; Cornelia Huth; Tonia de Las Heras Gala; Florian Kronenberg; Christian Herder; Wolfgang Koenig; Christa Meisinger; Wolfgang Rathmann; Melanie Waldenberger; Michael Roden; Annette Peters; Barbara Thorand; Stefanie M Hauck
Journal:  Diabetologia       Date:  2016-06-25       Impact factor: 10.122

10.  Detection and correction of interference in SRM analysis.

Authors:  Y Bao; S Waldemarson; G Zhang; A Wahlander; B Ueberheide; S Myung; B Reed; K Molloy; J C Padovan; J Eriksson; T A Neubert; B T Chait; D Fenyö
Journal:  Methods       Date:  2013-05-23       Impact factor: 3.608
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