Literature DB >> 23545641

The 1.58 Å resolution structure of the DNA-binding domain of bacteriophage SF6 small terminase provides new hints on DNA binding.

Stefano Benini1, Maria Chechik, Miguel Ortiz Lombardía, Sigrun Polier, Andrew Leech, Mikhail B Shevtsov, Juan C Alonso.   

Abstract

DNA packaging in tailed bacteriophages and in evolutionarily related herpesviruses is controlled by a viral-encoded terminase. As in a number of other phages, in the Bacillus subtilis bacteriophages SF6 and SPP1 the terminase complex consists of two proteins: G1P and G2P. The crystal structure of the N-terminal DNA-binding domain of the bacteriophage SF6 small terminase subunit G1P is reported. Structural comparison with other DNA-binding proteins allows a general model for the interaction of G1P with the packaging-initiation site to be proposed.

Entities:  

Keywords:  DNA-binding domains; G1P; SF6; bacteriophages; terminases; viruses

Mesh:

Substances:

Year:  2013        PMID: 23545641      PMCID: PMC3614160          DOI: 10.1107/S1744309113004399

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  32 in total

1.  Biophysical characterization of the DNA binding domain of gpNu1, a viral DNA packaging protein.

Authors:  D L Bain; N Berton; M Ortega; J Baran; Q Yang; C E Catalano
Journal:  J Biol Chem       Date:  2001-02-27       Impact factor: 5.157

2.  SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.

Authors:  A A Vaguine; J Richelle; S J Wodak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

3.  Structure of p22 headful packaging nuclease.

Authors:  Ankoor Roy; Gino Cingolani
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Authors:  Sherwood R Casjens
Journal:  Nat Rev Microbiol       Date:  2011-08-12       Impact factor: 60.633

5.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

6.  Analysis of the Bacillus subtilis bacteriophages SPP1 and SF6 gene 1 product: a protein involved in the initiation of headful packaging.

Authors:  S Chai; V Kruft; J C Alonso
Journal:  Virology       Date:  1994-08-01       Impact factor: 3.616

7.  How the human telomeric proteins TRF1 and TRF2 recognize telomeric DNA: a view from high-resolution crystal structures.

Authors:  Robert Court; Lynda Chapman; Louise Fairall; Daniela Rhodes
Journal:  EMBO Rep       Date:  2005-01       Impact factor: 8.807

8.  Functional analysis of the Bacillus subtilis bacteriophage SPP1 pac site.

Authors:  A Bravo; J C Alonso; T A Trautner
Journal:  Nucleic Acids Res       Date:  1990-05-25       Impact factor: 16.971

9.  Crystal structure of the DNA-recognition component of the bacterial virus Sf6 genome-packaging machine.

Authors:  Haiyan Zhao; Casey J Finch; Reuben D Sequeira; Brian A Johnson; John E Johnson; Sherwood R Casjens; Liang Tang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-19       Impact factor: 11.205

10.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24
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  2 in total

1.  DNA recognition for virus assembly through multiple sequence-independent interactions with a helix-turn-helix motif.

Authors:  Sandra J Greive; Herman K H Fung; Maria Chechik; Huw T Jenkins; Stephen E Weitzel; Pedro M Aguiar; Andrew S Brentnall; Matthieu Glousieau; Grigory V Gladyshev; Jennifer R Potts; Alfred A Antson
Journal:  Nucleic Acids Res       Date:  2015-12-15       Impact factor: 16.971

2.  DNA Packaging Specificity of Bacteriophage N15 with an Excursion into the Genetics of a Cohesive End Mismatch.

Authors:  Michael Feiss; Jea Young Min; Sawsan Sultana; Priyal Patel; Jean Sippy
Journal:  PLoS One       Date:  2015-12-03       Impact factor: 3.240

  2 in total

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