Literature DB >> 23541159

High-speed AFM and applications to biomolecular systems.

Toshio Ando1, Takayuki Uchihashi, Noriyuki Kodera.   

Abstract

Directly observing individual protein molecules in action at high spatiotemporal resolution has long been a holy grail for biological science. This is because we long have had to infer how proteins function from the static snapshots of their structures and dynamic behavior of optical makers attached to the molecules. This limitation has recently been removed to a large extent by the materialization of high-speed atomic force microscopy (HS-AFM). HS-AFM allows us to directly visualize the structure dynamics and dynamic processes of biological molecules in physiological solutions, at subsecond to sub-100-ms temporal resolution, without disturbing their function. In fact, dynamically acting molecules such as myosin V walking on an actin filament and bacteriorhodopsin in response to light are successfully visualized. In this review, we first describe theoretical considerations for the highest possible imaging rate of this new microscope, and then highlight recent imaging studies. Finally, the current limitation and future challenges to explore are described.

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Year:  2013        PMID: 23541159     DOI: 10.1146/annurev-biophys-083012-130324

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  56 in total

1.  Cofilin-induced unidirectional cooperative conformational changes in actin filaments revealed by high-speed atomic force microscopy.

Authors:  Kien Xuan Ngo; Noriyuki Kodera; Eisaku Katayama; Toshio Ando; Taro Q P Uyeda
Journal:  Elife       Date:  2015-02-02       Impact factor: 8.140

Review 2.  Imaging modes of atomic force microscopy for application in molecular and cell biology.

Authors:  Yves F Dufrêne; Toshio Ando; Ricardo Garcia; David Alsteens; David Martinez-Martin; Andreas Engel; Christoph Gerber; Daniel J Müller
Journal:  Nat Nanotechnol       Date:  2017-04-06       Impact factor: 39.213

3.  Single-molecule imaging analysis of elementary reaction steps of Trichoderma reesei cellobiohydrolase I (Cel7A) hydrolyzing crystalline cellulose Iα and IIII.

Authors:  Yusuke Shibafuji; Akihiko Nakamura; Takayuki Uchihashi; Naohisa Sugimoto; Shingo Fukuda; Hiroki Watanabe; Masahiro Samejima; Toshio Ando; Hiroyuki Noji; Anu Koivula; Kiyohiko Igarashi; Ryota Iino
Journal:  J Biol Chem       Date:  2014-04-01       Impact factor: 5.157

4.  Mechanical operation and intersubunit coordination of ring-shaped molecular motors: insights from single-molecule studies.

Authors:  Shixin Liu; Gheorghe Chistol; Carlos Bustamante
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

5.  High-speed atomic force microscopy reveals structural dynamics of amyloid β1-42 aggregates.

Authors:  Takahiro Watanabe-Nakayama; Kenjiro Ono; Masahiro Itami; Ryoichi Takahashi; David B Teplow; Masahito Yamada
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-09       Impact factor: 11.205

6.  Detection of atomic force microscopy cantilever displacement with a transmitted electron beam.

Authors:  R Wagner; T J Woehl; R R Keller; J P Killgore
Journal:  Appl Phys Lett       Date:  2016-07-29       Impact factor: 3.791

Review 7.  Progress in imaging methods: insights gained into Plasmodium biology.

Authors:  Mariana De Niz; Paul-Christian Burda; Gesine Kaiser; Hernando A Del Portillo; Tobias Spielmann; Freddy Frischknecht; Volker T Heussler
Journal:  Nat Rev Microbiol       Date:  2016-11-28       Impact factor: 60.633

8.  Dynamics of oligomer and amyloid fibril formation by yeast prion Sup35 observed by high-speed atomic force microscopy.

Authors:  Hiroki Konno; Takahiro Watanabe-Nakayama; Takayuki Uchihashi; Momoko Okuda; Liwen Zhu; Noriyuki Kodera; Yousuke Kikuchi; Toshio Ando; Hideki Taguchi
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-25       Impact factor: 11.205

9.  Atomic force microscopy studies of APOBEC3G oligomerization and dynamics.

Authors:  Luda S Shlyakhtenko; Alexander Y Lushnikov; Atsushi Miyagi; Ming Li; Reuben S Harris; Yuri L Lyubchenko
Journal:  J Struct Biol       Date:  2013-09-18       Impact factor: 2.867

10.  Combining confocal and atomic force microscopy to quantify single-virus binding to mammalian cell surfaces.

Authors:  Richard Newton; Martin Delguste; Melanie Koehler; Andra C Dumitru; Pawel R Laskowski; Daniel J Müller; David Alsteens
Journal:  Nat Protoc       Date:  2017-10-05       Impact factor: 13.491

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