Literature DB >> 23540689

Interplay between the cancer genome and epigenome.

Hui Shen1, Peter W Laird.   

Abstract

Cancer arises as a consequence of cumulative disruptions to cellular growth control with Darwinian selection for those heritable changes that provide the greatest clonal advantage. These traits can be acquired and stably maintained by either genetic or epigenetic means. Here, we explore the ways in which alterations in the genome and epigenome influence each other and cooperate to promote oncogenic transformation. Disruption of epigenomic control is pervasive in malignancy and can be classified as an enabling characteristic of cancer cells, akin to genome instability and mutation.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23540689      PMCID: PMC3648790          DOI: 10.1016/j.cell.2013.03.008

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  198 in total

1.  Dnmt3a is essential for hematopoietic stem cell differentiation.

Authors:  Grant A Challen; Deqiang Sun; Mira Jeong; Min Luo; Jaroslav Jelinek; Jonathan S Berg; Christoph Bock; Aparna Vasanthakumar; Hongcang Gu; Yuanxin Xi; Shoudan Liang; Yue Lu; Gretchen J Darlington; Alexander Meissner; Jean-Pierre J Issa; Lucy A Godley; Wei Li; Margaret A Goodell
Journal:  Nat Genet       Date:  2011-12-04       Impact factor: 38.330

2.  Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains.

Authors:  Benjamin P Berman; Daniel J Weisenberger; Joseph F Aman; Toshinori Hinoue; Zachary Ramjan; Yaping Liu; Houtan Noushmehr; Christopher P E Lange; Cornelis M van Dijk; Rob A E M Tollenaar; David Van Den Berg; Peter W Laird
Journal:  Nat Genet       Date:  2011-11-27       Impact factor: 38.330

Review 3.  DNA methylation: TET proteins-guardians of CpG islands?

Authors:  Kristine Williams; Jesper Christensen; Kristian Helin
Journal:  EMBO Rep       Date:  2011-12-23       Impact factor: 8.807

4.  Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells.

Authors:  Oren Ram; Alon Goren; Ido Amit; Noam Shoresh; Nir Yosef; Jason Ernst; Manolis Kellis; Melissa Gymrek; Robbyn Issner; Michael Coyne; Timothy Durham; Xiaolan Zhang; Julie Donaghey; Charles B Epstein; Aviv Regev; Bradley E Bernstein
Journal:  Cell       Date:  2011-12-23       Impact factor: 41.582

5.  The genomic landscape of hypodiploid acute lymphoblastic leukemia.

Authors:  Linda Holmfeldt; Lei Wei; Ernesto Diaz-Flores; Michael Walsh; Jinghui Zhang; Li Ding; Debbie Payne-Turner; Michelle Churchman; Anna Andersson; Shann-Ching Chen; Kelly McCastlain; Jared Becksfort; Jing Ma; Gang Wu; Samir N Patel; Susan L Heatley; Letha A Phillips; Guangchun Song; John Easton; Matthew Parker; Xiang Chen; Michael Rusch; Kristy Boggs; Bhavin Vadodaria; Erin Hedlund; Christina Drenberg; Sharyn Baker; Deqing Pei; Cheng Cheng; Robert Huether; Charles Lu; Robert S Fulton; Lucinda L Fulton; Yashodhan Tabib; David J Dooling; Kerri Ochoa; Mark Minden; Ian D Lewis; L Bik To; Paula Marlton; Andrew W Roberts; Gordana Raca; Wendy Stock; Geoffrey Neale; Hans G Drexler; Ross A Dickins; David W Ellison; Sheila A Shurtleff; Ching-Hon Pui; Raul C Ribeiro; Meenakshi Devidas; Andrew J Carroll; Nyla A Heerema; Brent Wood; Michael J Borowitz; Julie M Gastier-Foster; Susana C Raimondi; Elaine R Mardis; Richard K Wilson; James R Downing; Stephen P Hunger; Mignon L Loh; Charles G Mullighan
Journal:  Nat Genet       Date:  2013-01-20       Impact factor: 38.330

Review 6.  Chromatin: receiver and quarterback for cellular signals.

Authors:  David G Johnson; Sharon Y R Dent
Journal:  Cell       Date:  2013-01-31       Impact factor: 41.582

7.  H3.3 G34R mutations in pediatric primitive neuroectodermal tumors of central nervous system (CNS-PNET) and pediatric glioblastomas: possible diagnostic and therapeutic implications?

Authors:  Marco Gessi; Gerrit H Gielen; Jennifer Hammes; Evelyn Dörner; Anja Zur Mühlen; Andreas Waha; Torsten Pietsch
Journal:  J Neurooncol       Date:  2013-01-26       Impact factor: 4.130

8.  Loss-of-function mutations in SMARCE1 cause an inherited disorder of multiple spinal meningiomas.

Authors:  Miriam J Smith; James O'Sullivan; Sanjeev S Bhaskar; Kristen D Hadfield; Gemma Poke; John Caird; Saba Sharif; Diana Eccles; David Fitzpatrick; Daniel Rawluk; Daniel du Plessis; William G Newman; D Gareth Evans
Journal:  Nat Genet       Date:  2013-02-03       Impact factor: 38.330

9.  Tissue of origin determines cancer-associated CpG island promoter hypermethylation patterns.

Authors:  Duncan Sproul; Robert R Kitchen; Colm E Nestor; J Michael Dixon; Andrew H Sims; David J Harrison; Bernard H Ramsahoye; Richard R Meehan
Journal:  Genome Biol       Date:  2012-10-03       Impact factor: 13.583

10.  Rare allelic forms of PRDM9 associated with childhood leukemogenesis.

Authors:  Julie Hussin; Daniel Sinnett; Ferran Casals; Youssef Idaghdour; Vanessa Bruat; Virginie Saillour; Jasmine Healy; Jean-Christophe Grenier; Thibault de Malliard; Stephan Busche; Jean-François Spinella; Mathieu Larivière; Greg Gibson; Anna Andersson; Linda Holmfeldt; Jing Ma; Lei Wei; Jinghui Zhang; Gregor Andelfinger; James R Downing; Charles G Mullighan; Philip Awadalla
Journal:  Genome Res       Date:  2012-12-05       Impact factor: 9.043

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  353 in total

1.  Heterogeneity of DNA methylation in multifocal prostate cancer.

Authors:  Inga Serenaite; Kristina Daniunaite; Feliksas Jankevicius; Arvydas Laurinavicius; Donatas Petroska; Juozas R Lazutka; Sonata Jarmalaite
Journal:  Virchows Arch       Date:  2014-11-05       Impact factor: 4.064

2.  Mutant WT1 is associated with DNA hypermethylation of PRC2 targets in AML and responds to EZH2 inhibition.

Authors:  Subarna Sinha; Daniel Thomas; Linda Yu; Andrew J Gentles; Namyoung Jung; M Ryan Corces-Zimmerman; Steven M Chan; Andreas Reinisch; Andrew P Feinberg; David L Dill; Ravindra Majeti
Journal:  Blood       Date:  2014-11-14       Impact factor: 22.113

Review 3.  Epigenetic dysregulation in follicular lymphoma.

Authors:  Shamzah Araf; Jessica Okosun; Lola Koniali; Jude Fitzgibbon; James Heward
Journal:  Epigenomics       Date:  2015-12-23       Impact factor: 4.778

4.  DNA methylation-based profiling of uterine neoplasms: a novel tool to improve gynecologic cancer diagnostics.

Authors:  Felix K F Kommoss; Damian Stichel; Daniel Schrimpf; Mark Kriegsmann; Basile Tessier-Cloutier; Aline Talhouk; Jessica N McAlpine; Kenneth T E Chang; Dominik Sturm; Stefan M Pfister; Laura Romero-Pérez; Thomas Kirchner; Thomas G P Grünewald; Rolf Buslei; Hans-Peter Sinn; Gunhild Mechtersheimer; Peter Schirmacher; Dietmar Schmidt; Hans-Anton Lehr; Felix Sahm; David G Huntsman; C Blake Gilks; Friedrich Kommoss; Andreas von Deimling; Christian Koelsche
Journal:  J Cancer Res Clin Oncol       Date:  2019-11-25       Impact factor: 4.553

5.  Genetic landscape of esophageal squamous cell carcinoma.

Authors:  Yi-Bo Gao; Zhao-Li Chen; Jia-Gen Li; Xue-Da Hu; Xue-Jiao Shi; Zeng-Miao Sun; Fan Zhang; Zi-Ran Zhao; Zi-Tong Li; Zi-Yuan Liu; Yu-Da Zhao; Jian Sun; Cheng-Cheng Zhou; Ran Yao; Su-Ya Wang; Pan Wang; Nan Sun; Bai-Hua Zhang; Jing-Si Dong; Yue Yu; Mei Luo; Xiao-Li Feng; Su-Sheng Shi; Fang Zhou; Feng-Wei Tan; Bin Qiu; Ning Li; Kang Shao; Li-Jian Zhang; Lan-Jun Zhang; Qi Xue; Shu-Geng Gao; Jie He
Journal:  Nat Genet       Date:  2014-08-24       Impact factor: 38.330

Review 6.  Characterising the epigenome as a key component of the fetal exposome in evaluating in utero exposures and childhood cancer risk.

Authors:  Akram Ghantous; Hector Hernandez-Vargas; Graham Byrnes; Terence Dwyer; Zdenko Herceg
Journal:  Mutagenesis       Date:  2015-02-26       Impact factor: 3.000

Review 7.  Epigenetic plasticity and the hallmarks of cancer.

Authors:  William A Flavahan; Elizabeth Gaskell; Bradley E Bernstein
Journal:  Science       Date:  2017-07-21       Impact factor: 47.728

8.  Early Prediction of Cancer Progression by Depth-Resolved Nanoscale Mapping of Nuclear Architecture from Unstained Tissue Specimens.

Authors:  Shikhar Uttam; Hoa V Pham; Justin LaFace; Brian Leibowitz; Jian Yu; Randall E Brand; Douglas J Hartman; Yang Liu
Journal:  Cancer Res       Date:  2015-09-17       Impact factor: 12.701

9.  Low-Coverage Exome Sequencing Screen in Formalin-Fixed Paraffin-Embedded Tumors Reveals Evidence of Exposure to Carcinogenic Aristolochic Acid.

Authors:  Xavier Castells; Sandra Karanović; Maude Ardin; Karla Tomić; Evanguelos Xylinas; Geoffroy Durand; Stephanie Villar; Nathalie Forey; Florence Le Calvez-Kelm; Catherine Voegele; Krešimir Karlović; Maja Mišić; Damir Dittrich; Igor Dolgalev; James McKay; Shahrokh F Shariat; Viktoria S Sidorenko; Andrea Fernandes; Adriana Heguy; Kathleen G Dickman; Magali Olivier; Arthur P Grollman; Bojan Jelaković; Jiri Zavadil
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2015-09-17       Impact factor: 4.254

10.  Comprehensive silencing of target-sharing microRNAs is a mechanism for SIRT1 overexpression in cancer.

Authors:  Kotaro Kiga; Yoko Fukuda-Yuzawa; Masanobu Tanabe; Shoji Tsuji; Chihiro Sasakawa; Taro Fukao
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

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