Literature DB >> 23535175

Role of Rck-Pat1b binding in assembly of processing-bodies.

Sevim Ozgur1, Georg Stoecklin.   

Abstract

The DEAD box RNA helicase Rck and the scaffold protein Pat1b participate in controlling gene expression at the post-transcriptional level by suppressing mRNA translation and promoting mRNA decapping. In addition, both proteins are required for the assembly of processing (P)-bodies, cytoplasmic foci that contain stalled mRNAs and numerous components of the mRNA decay machinery. The C-terminal RecA-like domain of Rck interacts with the N-terminal acidic domain of Pat1b. Here, we identified point mutations in human Rck and Pat1b that prevent the two proteins from binding to each other. By analyzing interaction-deficient mutants in combination with knockdown and rescue strategies in human HeLa cells, we found that Pat1b assembles P-bodies and suppresses expression of tethered mRNAs in the absence of Rck binding. In contrast, Rck requires the Pat1b-binding site in order to promote P-body assembly and associate with the decapping enzyme Dcp2 as well as Ago2 and TNRC6A, two core components of the RNA-induced silencing complex. Our data indicate that P-body assembly occurs in a step-wise manner, where Rck participates in the initial suppression of mRNA translation, whereas Pat1b in a second step triggers P-body assembly and promotes mRNA decapping.

Entities:  

Keywords:  PatL1/Pat1b; RNA helicase; RNA-induced silencing complex; Rck/p54; decapping; mRNA degradation; processing body; translation suppression

Mesh:

Substances:

Year:  2013        PMID: 23535175      PMCID: PMC3710359          DOI: 10.4161/rna.24086

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  38 in total

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Authors:  Nicole Fischer; Karsten Weis
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Journal:  RNA       Date:  2001-12       Impact factor: 4.942

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Authors:  L Hatfield; C A Beelman; A Stevens; R Parker
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  10 in total

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2.  A unique surface on Pat1 C-terminal domain directly interacts with Dcp2 decapping enzyme and Xrn1 5'-3' mRNA exonuclease in yeast.

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3.  Structural analysis of the yeast Dhh1-Pat1 complex reveals how Dhh1 engages Pat1, Edc3 and RNA in mutually exclusive interactions.

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Journal:  Nucleic Acids Res       Date:  2013-07-12       Impact factor: 16.971

4.  An optimized streptavidin-binding RNA aptamer for purification of ribonucleoprotein complexes identifies novel ARE-binding proteins.

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5.  Dual mechanisms regulate the nucleocytoplasmic localization of human DDX6.

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Review 6.  DEAD-Box Helicases: Sensors, Regulators, and Effectors for Antiviral Defense.

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Journal:  Viruses       Date:  2020-02-05       Impact factor: 5.048

7.  Specific Interaction of DDX6 with an RNA Hairpin in the 3' UTR of the Dengue Virus Genome Mediates G1 Phase Arrest.

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8.  The C-terminal domain from S. cerevisiae Pat1 displays two conserved regions involved in decapping factor recruitment.

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10.  Pat1 promotes processing body assembly by enhancing the phase separation of the DEAD-box ATPase Dhh1 and RNA.

Authors:  Ruchika Sachdev; Maria Hondele; Miriam Linsenmeier; Pascal Vallotton; Christopher F Mugler; Paolo Arosio; Karsten Weis
Journal:  Elife       Date:  2019-01-16       Impact factor: 8.140

  10 in total

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