Literature DB >> 23528039

Cultivation and characterization of thermophilic Nitrospira species from geothermal springs in the US Great Basin, China, and Armenia.

Tara A Edwards1, Nicole A Calica, Dolores A Huang, Namritha Manoharan, Weiguo Hou, Liuqin Huang, Hovik Panosyan, Hailiang Dong, Brian P Hedlund.   

Abstract

Despite its importance in the nitrogen cycle, little is known about nitrite oxidation at high temperatures. To bridge this gap, enrichment cultures were inoculated with sediment slurries from a variety of geothermal springs. While nitrite-oxidizing bacteria (NOB) were successfully enriched from seven hot springs located in US Great Basin, south-western China, and Armenia at ≤ 57.9 °C, all attempts to enrich NOB from > 10 hot springs at ≥ 61 °C failed. The stoichiometric conversion of nitrite to nitrate, chlorate sensitivity, and sensitivity to autoclaving all confirmed biological nitrite oxidation. Regardless of origin, all successful enrichments contained organisms with high 16S rRNA gene sequence identity (≥ 97%) with Nitrospira calida. In addition, Armenian enrichments also contained close relatives of Nitrospira moscoviensis. Physiological properties of all enrichments were similar, with a temperature optimum of 45-50 °C, yielding nitrite oxidation rates of 7.53 ± 1.20 to 23.0 ± 2.73 fmoles cell(-1) h(-1), and an upper temperature limit between 60 and 65 °C. The highest rates of NOB activity occurred with initial NO2 - concentrations of 0.5-0.75 mM; however, lower initial nitrite concentrations resulted in shorter lag times. The results presented here suggest a possible upper temperature limit of 60-65 °C for Nitrospira and demonstrate the wide geographic range of Nitrospira species in geothermal environments.
© 2013 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Entities:  

Keywords:  Nitrospira calida; Nitrospira moscoviensis; geothermal; nitrification; nitrite oxidation; thermophile

Mesh:

Substances:

Year:  2013        PMID: 23528039     DOI: 10.1111/1574-6941.12117

Source DB:  PubMed          Journal:  FEMS Microbiol Ecol        ISSN: 0168-6496            Impact factor:   4.194


  10 in total

1.  Thermophilic prokaryotic communities inhabiting the biofilm and well water of a thermal karst system located in Budapest (Hungary).

Authors:  Dóra Anda; Judit Makk; Gergely Krett; Laura Jurecska; Károly Márialigeti; Judit Mádl-Szőnyi; Andrea K Borsodi
Journal:  Extremophiles       Date:  2015-05-08       Impact factor: 2.395

2.  A robust nitrifying community in a bioreactor at 50 °C opens up the path for thermophilic nitrogen removal.

Authors:  Emilie Np Courtens; Eva Spieck; Ramiro Vilchez-Vargas; Samuel Bodé; Pascal Boeckx; Stefan Schouten; Ruy Jauregui; Dietmar H Pieper; Siegfried E Vlaeminck; Nico Boon
Journal:  ISME J       Date:  2016-02-19       Impact factor: 10.302

3.  Incomplete denitrification phenotypes in diverse Thermus species from diverse geothermal spring sediments and adjacent soils in southwest China.

Authors:  Chrisabelle C Mefferd; Enmin Zhou; Cale O Seymour; Noel A Bernardo; Shreya Srivastava; Amanda J Bengtson; Jian-Yu Jiao; Hailiang Dong; Wen-Jun Li; Brian P Hedlund
Journal:  Extremophiles       Date:  2022-07-08       Impact factor: 3.035

4.  Single-Cell-Genomics-Facilitated Read Binning of Candidate Phylum EM19 Genomes from Geothermal Spring Metagenomes.

Authors:  Eric D Becraft; Jeremy A Dodsworth; Senthil K Murugapiran; J Ingemar Ohlsson; Brandon R Briggs; Jad Kanbar; Iwijn De Vlaminck; Stephen R Quake; Hailiang Dong; Brian P Hedlund; Wesley D Swingley
Journal:  Appl Environ Microbiol       Date:  2015-12-04       Impact factor: 4.792

Review 5.  A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria.

Authors:  Holger Daims; Sebastian Lücker; Michael Wagner
Journal:  Trends Microbiol       Date:  2016-06-06       Impact factor: 17.079

6.  Extremophilic nitrite-oxidizing Chloroflexi from Yellowstone hot springs.

Authors:  Eva Spieck; Michael Spohn; Katja Wendt; Eberhard Bock; Jessup Shively; Jeroen Frank; Daniela Indenbirken; Malik Alawi; Sebastian Lücker; Jennifer Hüpeden
Journal:  ISME J       Date:  2019-10-17       Impact factor: 10.302

7.  The distribution and abundance of archaeal tetraether lipids in U.S. Great Basin hot springs.

Authors:  Julienne J Paraiso; Amanda J Williams; Qiuyuan Huang; Yuli Wei; Paul Dijkstra; Bruce A Hungate; Hailiang Dong; Brian P Hedlund; Chuanlun L Zhang
Journal:  Front Microbiol       Date:  2013-08-28       Impact factor: 5.640

8.  High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway.

Authors:  En-Min Zhou; Senthil K Murugapiran; Chrisabelle C Mefferd; Lan Liu; Wen-Dong Xian; Yi-Rui Yin; Hong Ming; Tian-Tian Yu; Marcel Huntemann; Alicia Clum; Manoj Pillay; Krishnaveni Palaniappan; Neha Varghese; Natalia Mikhailova; Dimitrios Stamatis; T B K Reddy; Chew Yee Ngan; Chris Daum; Nicole Shapiro; Victor Markowitz; Natalia Ivanova; Alexander Spunde; Nikos Kyrpides; Tanja Woyke; Wen-Jun Li; Brian P Hedlund
Journal:  Stand Genomic Sci       Date:  2016-02-27

9.  Greater temporal changes of sediment microbial community than its waterborne counterpart in Tengchong hot springs, Yunnan Province, China.

Authors:  Shang Wang; Hailiang Dong; Weiguo Hou; Hongchen Jiang; Qiuyuan Huang; Brandon R Briggs; Liuqin Huang
Journal:  Sci Rep       Date:  2014-12-19       Impact factor: 4.379

10.  Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira.

Authors:  Anne Daebeler; Katharina Kitzinger; Hanna Koch; Craig W Herbold; Michaela Steinfeder; Jasmin Schwarz; Thomas Zechmeister; Søren M Karst; Mads Albertsen; Per H Nielsen; Michael Wagner; Holger Daims
Journal:  ISME J       Date:  2020-07-24       Impact factor: 11.217

  10 in total

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