Literature DB >> 27283264

A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria.

Holger Daims1, Sebastian Lücker2, Michael Wagner3.   

Abstract

Nitrite-oxidizing bacteria (NOB) catalyze the second step of nitrification, nitrite oxidation to nitrate, which is an important process of the biogeochemical nitrogen cycle. NOB were traditionally perceived as physiologically restricted organisms and were less intensively studied than other nitrogen-cycling microorganisms. This picture is in contrast to new discoveries of an unexpected high diversity of mostly uncultured NOB and a great physiological versatility, which includes complex microbe-microbe interactions and lifestyles outside the nitrogen cycle. Most surprisingly, close relatives to NOB perform complete nitrification (ammonia oxidation to nitrate) and this finding will have far-reaching implications for nitrification research. We review recent work that has changed our perspective on NOB and provides a new basis for future studies on these enigmatic organisms.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  ammonia-oxidizing microorganisms; comammox.; nitrification; nitrite-oxidizing bacteria; reciprocal feeding

Mesh:

Substances:

Year:  2016        PMID: 27283264      PMCID: PMC6884419          DOI: 10.1016/j.tim.2016.05.004

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  92 in total

1.  In situ characterization of Nitrospira-like nitrite-oxidizing bacteria active in wastewater treatment plants.

Authors:  H Daims; J L Nielsen; P H Nielsen; K H Schleifer; M Wagner
Journal:  Appl Environ Microbiol       Date:  2001-11       Impact factor: 4.792

2.  Factors affecting the bacteriostatic action of sodium nitrite.

Authors:  A G CASTELLANI; C F NIVEN
Journal:  Appl Microbiol       Date:  1955-05

3.  Sustainability. Planetary boundaries: guiding human development on a changing planet.

Authors:  Will Steffen; Katherine Richardson; Johan Rockström; Sarah E Cornell; Ingo Fetzer; Elena M Bennett; Reinette Biggs; Stephen R Carpenter; Wim de Vries; Cynthia A de Wit; Carl Folke; Dieter Gerten; Jens Heinke; Georgina M Mace; Linn M Persson; Veerabhadran Ramanathan; Belinda Reyers; Sverker Sörlin
Journal:  Science       Date:  2015-01-15       Impact factor: 47.728

4.  Growth of nitrobacter in the presence of organic matter. II. Chemoorganotrophic growth of Nitrobacter agilis.

Authors:  E Bock
Journal:  Arch Microbiol       Date:  1976-07       Impact factor: 2.552

5.  A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria.

Authors:  Sebastian Lücker; Michael Wagner; Frank Maixner; Eric Pelletier; Hanna Koch; Benoit Vacherie; Thomas Rattei; Jaap S Sinninghe Damsté; Eva Spieck; Denis Le Paslier; Holger Daims
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-12       Impact factor: 11.205

6.  Role for urea in nitrification by polar marine Archaea.

Authors:  Laura Alonso-Sáez; Alison S Waller; Daniel R Mende; Kevin Bakker; Hanna Farnelid; Patricia L Yager; Connie Lovejoy; Jean-Éric Tremblay; Marianne Potvin; Friederike Heinrich; Marta Estrada; Lasse Riemann; Peer Bork; Carlos Pedrós-Alió; Stefan Bertilsson
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-01       Impact factor: 11.205

7.  Autotrophic ammonia oxidation at low pH through urea hydrolysis.

Authors:  S A Burton; J I Prosser
Journal:  Appl Environ Microbiol       Date:  2001-07       Impact factor: 4.792

8.  Relative Abundance of Nitrotoga spp. in a Biofilter of a Cold-Freshwater Aquaculture Plant Appears To Be Stimulated by Slightly Acidic pH.

Authors:  Jennifer Hüpeden; Simone Wegen; Sandra Off; Sebastian Lücker; Yvonne Bedarf; Holger Daims; Carsten Kühn; Eva Spieck
Journal:  Appl Environ Microbiol       Date:  2016-01-08       Impact factor: 4.792

9.  New methods for analysis of spatial distribution and coaggregation of microbial populations in complex biofilms.

Authors:  Robert Almstrand; Holger Daims; Frank Persson; Fred Sörensson; Malte Hermansson
Journal:  Appl Environ Microbiol       Date:  2013-07-26       Impact factor: 4.792

10.  Complete genome sequence of Nitrobacter hamburgensis X14 and comparative genomic analysis of species within the genus Nitrobacter.

Authors:  Shawn R Starkenburg; Frank W Larimer; Lisa Y Stein; Martin G Klotz; Patrick S G Chain; Luis A Sayavedra-Soto; Amisha T Poret-Peterson; Mira E Gentry; Daniel J Arp; Bess Ward; Peter J Bottomley
Journal:  Appl Environ Microbiol       Date:  2008-03-07       Impact factor: 4.792

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  95 in total

1.  Ubiquity and Diversity of Complete Ammonia Oxidizers (Comammox).

Authors:  Fei Xia; Jian-Gong Wang; Ting Zhu; Bin Zou; Sung-Keun Rhee; Zhe-Xue Quan
Journal:  Appl Environ Microbiol       Date:  2018-11-30       Impact factor: 4.792

2.  Enrichment and Physiological Characterization of a Cold-Adapted Nitrite-Oxidizing Nitrotoga sp. from an Eelgrass Sediment.

Authors:  Kento Ishii; Hirotsugu Fujitani; Kentaro Soh; Tatsunori Nakagawa; Reiji Takahashi; Satoshi Tsuneda
Journal:  Appl Environ Microbiol       Date:  2017-06-30       Impact factor: 4.792

3.  A Physiological and Genomic Comparison of Nitrosomonas Cluster 6a and 7 Ammonia-Oxidizing Bacteria.

Authors:  Christopher J Sedlacek; Brian McGowan; Yuichi Suwa; Luis Sayavedra-Soto; Hendrikus J Laanbroek; Lisa Y Stein; Jeanette M Norton; Martin G Klotz; Annette Bollmann
Journal:  Microb Ecol       Date:  2019-04-11       Impact factor: 4.552

4.  Identification of a parasitic symbiosis between respiratory metabolisms in the biogeochemical chlorine cycle.

Authors:  Tyler P Barnum; Yiwei Cheng; Kaisle A Hill; Lauren N Lucas; Hans K Carlson; John D Coates
Journal:  ISME J       Date:  2020-02-05       Impact factor: 10.302

Review 5.  Biological and Bioinspired Inorganic N-N Bond-Forming Reactions.

Authors:  Christina Ferousi; Sean H Majer; Ida M DiMucci; Kyle M Lancaster
Journal:  Chem Rev       Date:  2020-02-28       Impact factor: 60.622

6.  Use of Newly Designed Primers for Quantification of Complete Ammonia-Oxidizing (Comammox) Bacterial Clades and Strict Nitrite Oxidizers in the Genus Nitrospira.

Authors:  Ran Jiang; Jian-Gong Wang; Ting Zhu; Bin Zou; Dan-Qi Wang; Sung-Keun Rhee; Dong An; Zhi-Yuan Ji; Zhe-Xue Quan
Journal:  Appl Environ Microbiol       Date:  2020-10-01       Impact factor: 4.792

7.  Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira.

Authors:  Alejandro Palomo; Anders G Pedersen; S Jane Fowler; Arnaud Dechesne; Thomas Sicheritz-Pontén; Barth F Smets
Journal:  ISME J       Date:  2018-03-07       Impact factor: 10.302

Review 8.  The microbial nitrogen-cycling network.

Authors:  Marcel M M Kuypers; Hannah K Marchant; Boran Kartal
Journal:  Nat Rev Microbiol       Date:  2018-02-05       Impact factor: 60.633

9.  Multiheme hydroxylamine oxidoreductases produce NO during ammonia oxidation in methanotrophs.

Authors:  Wouter Versantvoort; Arjan Pol; Mike S M Jetten; Laura van Niftrik; Joachim Reimann; Boran Kartal; Huub J M Op den Camp
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-10       Impact factor: 11.205

10.  Expanded Diversity and Metabolic Versatility of Marine Nitrite-Oxidizing Bacteria Revealed by Cultivation- and Genomics-Based Approaches.

Authors:  Soo-Je Park; Adrian-Ştefan Andrei; Paul-Adrian Bulzu; Vinicius S Kavagutti; Rohit Ghai; Annika C Mosier
Journal:  Appl Environ Microbiol       Date:  2020-10-28       Impact factor: 4.792

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