Literature DB >> 23524488

Emerging roles for chromatin as a signal integration and storage platform.

Aimee I Badeaux1, Yang Shi.   

Abstract

Cells of a multicellular organism, all containing nearly identical genetic information, respond to differentiation cues in variable ways. In addition, cells are plastic, able to execute their specialized function while maintaining the ability to adapt to environmental changes. This is achieved through multiple mechanisms, including the direct regulation of chromatin-based processes in response to stimuli. How signal transduction pathways directly communicate with chromatin to change the epigenetic landscape is poorly understood. The preponderance of covalent modifications on histone tails coupled with a relatively small number of functional outputs raises the possibility that chromatin acts as a site of signal integration and storage.

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Year:  2013        PMID: 23524488      PMCID: PMC4082330          DOI: 10.1038/nrm3545

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  129 in total

1.  Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription.

Authors:  Ray Kit Ng; J B Gurdon
Journal:  Nat Cell Biol       Date:  2007-12-09       Impact factor: 28.824

Review 2.  When signaling kinases meet histones and histone modifiers in the nucleus.

Authors:  Sung Hee Baek
Journal:  Mol Cell       Date:  2011-05-06       Impact factor: 17.970

3.  Phosphorylation of histone H3T6 by PKCbeta(I) controls demethylation at histone H3K4.

Authors:  Eric Metzger; Axel Imhof; Dharmeshkumar Patel; Philip Kahl; Katrin Hoffmeyer; Nicolaus Friedrichs; Judith M Müller; Holger Greschik; Jutta Kirfel; Sujuan Ji; Natalia Kunowska; Christian Beisenherz-Huss; Thomas Günther; Reinhard Buettner; Roland Schüle
Journal:  Nature       Date:  2010-03-14       Impact factor: 49.962

4.  Suppression of the antiviral response by an influenza histone mimic.

Authors:  Ivan Marazzi; Jessica S Y Ho; Jaehoon Kim; Balaji Manicassamy; Scott Dewell; Randy A Albrecht; Chris W Seibert; Uwe Schaefer; Kate L Jeffrey; Rab K Prinjha; Kevin Lee; Adolfo García-Sastre; Robert G Roeder; Alexander Tarakhovsky
Journal:  Nature       Date:  2012-03-14       Impact factor: 49.962

5.  PRMT5-mediated methylation of histone H4R3 recruits DNMT3A, coupling histone and DNA methylation in gene silencing.

Authors:  Quan Zhao; Gerhard Rank; Yuen T Tan; Haitao Li; Robert L Moritz; Richard J Simpson; Loretta Cerruti; David J Curtis; Dinshaw J Patel; C David Allis; John M Cunningham; Stephen M Jane
Journal:  Nat Struct Mol Biol       Date:  2009-02-22       Impact factor: 15.369

6.  Suppression of oxidative stress by β-hydroxybutyrate, an endogenous histone deacetylase inhibitor.

Authors:  Tadahiro Shimazu; Matthew D Hirschey; John Newman; Wenjuan He; Kotaro Shirakawa; Natacha Le Moan; Carrie A Grueter; Hyungwook Lim; Laura R Saunders; Robert D Stevens; Christopher B Newgard; Robert V Farese; Rafael de Cabo; Scott Ulrich; Katerina Akassoglou; Eric Verdin
Journal:  Science       Date:  2012-12-06       Impact factor: 47.728

Review 7.  Cancer and altered metabolism: potential importance of hypoxia-inducible factor and 2-oxoglutarate-dependent dioxygenases.

Authors:  W G Kaelin
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2011-11-16

8.  The C-terminal domain of RNA polymerase II is modified by site-specific methylation.

Authors:  Robert J Sims; Luis Alejandro Rojas; David B Beck; Roberto Bonasio; Roland Schüller; William J Drury; Dirk Eick; Danny Reinberg
Journal:  Science       Date:  2011-04-01       Impact factor: 47.728

9.  TNF/p38α/polycomb signaling to Pax7 locus in satellite cells links inflammation to the epigenetic control of muscle regeneration.

Authors:  Daniela Palacios; Chiara Mozzetta; Silvia Consalvi; Giuseppina Caretti; Valentina Saccone; Valentina Proserpio; Victor E Marquez; Sergio Valente; Antonello Mai; Sonia V Forcales; Vittorio Sartorelli; Pier Lorenzo Puri
Journal:  Cell Stem Cell       Date:  2010-10-08       Impact factor: 24.633

10.  Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans.

Authors:  Eric L Greer; Travis J Maures; Duygu Ucar; Anna G Hauswirth; Elena Mancini; Jana P Lim; Bérénice A Benayoun; Yang Shi; Anne Brunet
Journal:  Nature       Date:  2011-10-19       Impact factor: 49.962

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  122 in total

1.  Monitoring Cellular Phosphorylation Signaling Pathways into Chromatin and Down to the Gene Level.

Authors:  Yumiao Han; Zuo-Fei Yuan; Rosalynn C Molden; Benjamin A Garcia
Journal:  Mol Cell Proteomics       Date:  2015-11-05       Impact factor: 5.911

Review 2.  Harnessing the plasticity of CD4(+) T cells to treat immune-mediated disease.

Authors:  Michel DuPage; Jeffrey A Bluestone
Journal:  Nat Rev Immunol       Date:  2016-02-15       Impact factor: 53.106

Review 3.  Histone methyltransferase and histone methylation in inflammatory T-cell responses.

Authors:  Shan He; Qing Tong; Dennis Keith Bishop; Yi Zhang
Journal:  Immunotherapy       Date:  2013-09       Impact factor: 4.196

4.  Unabridged Analysis of Human Histone H3 by Differential Top-Down Mass Spectrometry Reveals Hypermethylated Proteoforms from MMSET/NSD2 Overexpression.

Authors:  Yupeng Zheng; Luca Fornelli; Philip D Compton; Seema Sharma; Jesse Canterbury; Christopher Mullen; Vlad Zabrouskov; Ryan T Fellers; Paul M Thomas; Jonathan D Licht; Michael W Senko; Neil L Kelleher
Journal:  Mol Cell Proteomics       Date:  2015-08-13       Impact factor: 5.911

5.  Kinases and chromatin structure: who regulates whom?

Authors:  Benoit Miotto
Journal:  Epigenetics       Date:  2013-08-05       Impact factor: 4.528

Review 6.  Nuclear reprogramming and its role in vascular smooth muscle cells.

Authors:  Silvio Zaina; Maria del Pilar Valencia-Morales; Fabiola E Tristán-Flores; Gertrud Lund
Journal:  Curr Atheroscler Rep       Date:  2013-09       Impact factor: 5.113

Review 7.  A double take on bivalent promoters.

Authors:  Philipp Voigt; Wee-Wei Tee; Danny Reinberg
Journal:  Genes Dev       Date:  2013-06-15       Impact factor: 11.361

8.  Prefrontal cortex expression of chromatin modifier genes in male WSP and WSR mice changes across ethanol dependence, withdrawal, and abstinence.

Authors:  Joel G Hashimoto; David P Gavin; Kristine M Wiren; John C Crabbe; Marina Guizzetti
Journal:  Alcohol       Date:  2017-03-14       Impact factor: 2.405

9.  Disconnect between alcohol-induced alterations in chromatin structure and gene transcription in a mouse embryonic stem cell model of exposure.

Authors:  Kylee J Veazey; Haiqing Wang; Yudhishtar S Bedi; William M Skiles; Richard Cheng-An Chang; Michael C Golding
Journal:  Alcohol       Date:  2017-01-11       Impact factor: 2.405

10.  Demethylation of ERECTA receptor genes by IBM1 histone demethylase affects stomatal development.

Authors:  Yuhua Wang; Xueyi Xue; Jian-Kang Zhu; Juan Dong
Journal:  Development       Date:  2016-10-03       Impact factor: 6.868

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