Literature DB >> 23523260

The emerging CHO systems biology era: harnessing the 'omics revolution for biotechnology.

Helene Faustrup Kildegaard1, Deniz Baycin-Hizal, Nathan E Lewis, Michael J Betenbaugh.   

Abstract

Chinese hamster ovary (CHO) cells are the primary factories for biopharmaceuticals because of their capacity to correctly fold and post-translationally modify recombinant proteins compatible with humans. New opportunities are arising to enhance these cell factories, especially since the CHO-K1 cell line was recently sequenced. Now, the CHO systems biology era is underway. Critical 'omics data sets, including proteomics, transcriptomics, metabolomics, fluxomics, and glycomics, are emerging, allowing the elucidation of the molecular basis of CHO cell physiology. The incorporation of these data sets into mathematical models that describe CHO phenotypes will provide crucial biotechnology insights. As 'omics technologies and computational systems biology mature, genome-scale approaches will lead to major innovations in cell line development and metabolic engineering, thereby improving protein production and bioprocessing.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23523260     DOI: 10.1016/j.copbio.2013.02.007

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  39 in total

1.  A Markov chain model for N-linked protein glycosylation--towards a low-parameter tool for model-driven glycoengineering.

Authors:  Philipp N Spahn; Anders H Hansen; Henning G Hansen; Johnny Arnsdorf; Helene F Kildegaard; Nathan E Lewis
Journal:  Metab Eng       Date:  2015-10-29       Impact factor: 9.783

Review 2.  Modulating carbohydrate-protein interactions through glycoengineering of monoclonal antibodies to impact cancer physiology.

Authors:  Austin Wt Chiang; Shangzhong Li; Philipp N Spahn; Anne Richelle; Chih-Chung Kuo; Mojtaba Samoudi; Nathan E Lewis
Journal:  Curr Opin Struct Biol       Date:  2016-09-14       Impact factor: 6.809

3.  Enhanced IgG1 production by overexpression of nuclear factor kappa B inhibitor zeta (NFKBIZ) in Chinese hamster ovary cells.

Authors:  Masayoshi Onitsuka; Yukie Kinoshita; Akitoshi Nishizawa; Tomomi Tsutsui; Takeshi Omasa
Journal:  Cytotechnology       Date:  2017-11-29       Impact factor: 2.058

4.  Effects of different 2A peptides on transgene expression mediated by tricistronic vectors in transfected CHO cells.

Authors:  Yan-Mei Li; Meng Wang; Tian-Yun Wang; Yong-Ge Wei; Xiao Guo; Chun-Liu Mi; Chun-Peng Zhao; Xiang-Xiang Cao; Yuan-Yuan Dou
Journal:  Mol Biol Rep       Date:  2019-10-28       Impact factor: 2.316

5.  A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism.

Authors:  Hooman Hefzi; Kok Siong Ang; Michael Hanscho; Aarash Bordbar; David Ruckerbauer; Meiyappan Lakshmanan; Camila A Orellana; Deniz Baycin-Hizal; Yingxiang Huang; Daniel Ley; Veronica S Martinez; Sarantos Kyriakopoulos; Natalia E Jiménez; Daniel C Zielinski; Lake-Ee Quek; Tune Wulff; Johnny Arnsdorf; Shangzhong Li; Jae Seong Lee; Giuseppe Paglia; Nicolas Loira; Philipp N Spahn; Lasse E Pedersen; Jahir M Gutierrez; Zachary A King; Anne Mathilde Lund; Harish Nagarajan; Alex Thomas; Alyaa M Abdel-Haleem; Juergen Zanghellini; Helene F Kildegaard; Bjørn G Voldborg; Ziomara P Gerdtzen; Michael J Betenbaugh; Bernhard O Palsson; Mikael R Andersen; Lars K Nielsen; Nicole Borth; Dong-Yup Lee; Nathan E Lewis
Journal:  Cell Syst       Date:  2016-11-23       Impact factor: 10.304

Review 6.  The role of replicates for error mitigation in next-generation sequencing.

Authors:  Kimberly Robasky; Nathan E Lewis; George M Church
Journal:  Nat Rev Genet       Date:  2013-12-10       Impact factor: 53.242

7.  Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome.

Authors:  Nathan E Lewis; Xin Liu; Yuxiang Li; Harish Nagarajan; George Yerganian; Edward O'Brien; Aarash Bordbar; Anne M Roth; Jeffrey Rosenbloom; Chao Bian; Min Xie; Wenbin Chen; Ning Li; Deniz Baycin-Hizal; Haythem Latif; Jochen Forster; Michael J Betenbaugh; Iman Famili; Xun Xu; Jun Wang; Bernhard O Palsson
Journal:  Nat Biotechnol       Date:  2013-07-21       Impact factor: 54.908

8.  Multi-Omics Reveals Impact of Cysteine Feed Concentration and Resulting Redox Imbalance on Cellular Energy Metabolism and Specific Productivity in CHO Cell Bioprocessing.

Authors:  Amr S Ali; Rachel Chen; Ravali Raju; Rashmi Kshirsagar; Alan Gilbert; Li Zang; Barry L Karger; Alexander R Ivanov
Journal:  Biotechnol J       Date:  2020-04-03       Impact factor: 4.677

9.  Systematically gap-filling the genome-scale metabolic model of CHO cells.

Authors:  Hamideh Fouladiha; Sayed-Amir Marashi; Shangzhong Li; Zerong Li; Helen O Masson; Behrouz Vaziri; Nathan E Lewis
Journal:  Biotechnol Lett       Date:  2020-10-10       Impact factor: 2.461

10.  Improvements in protein production in mammalian cells from targeted metabolic engineering.

Authors:  Anne Richelle; Nathan E Lewis
Journal:  Curr Opin Syst Biol       Date:  2017-06-06
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