Literature DB >> 23520021

Are all regions of folded proteins that undergo ligand-dependent order-disorder transitions targets for allosteric peptide mimetics?

Aron W Fenton1.   

Abstract

Although the classical view of how proteins function relied on well folded structures, it is now recognized that the functions of many proteins are dependent on being intrinsically disordered. The primary consideration in this work is the intermediate group of proteins that are overall well folded, but which contain small regions that undergo order-disorder transitions. In particular, the current focus is on those order-disorder transitions that are energetically coupled to ligand binding. As exemplified by the case of human liver pyruvate kinase (hL-PYK), peptides that mimic the sequence of the order-disorder region can be used as allosteric regulators of the enzyme. On the basis of this example and others reported in the literature, we propose that a similar use of peptides that mimic protein regions that experience ligand-dependent order-disorder transitions can be a generalized initiation point for the development of allosteric drugs.
Copyright © 2013 Wiley Periodicals, Inc.

Entities:  

Keywords:  allosteric regulation; disordered regions; peptide mimetics; pyruvate kinase

Mesh:

Substances:

Year:  2013        PMID: 23520021      PMCID: PMC3735636          DOI: 10.1002/bip.22239

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  53 in total

Review 1.  Structural basis for control by phosphorylation.

Authors:  L N Johnson; R J Lewis
Journal:  Chem Rev       Date:  2001-08       Impact factor: 60.622

2.  Comparison of cAMP-dependent protein kinase substrate specificity in reaction with proteins and synthetic peptides.

Authors:  Mart Loog; Nikita Oskolkov; Fergal O'Farrell; Pia Ek; Jaak Järv
Journal:  Biochim Biophys Acta       Date:  2004-12-28

3.  Structure of the insulin receptor ectodomain reveals a folded-over conformation.

Authors:  Neil M McKern; Michael C Lawrence; Victor A Streltsov; Mei-Zhen Lou; Timothy E Adams; George O Lovrecz; Thomas C Elleman; Kim M Richards; John D Bentley; Patricia A Pilling; Peter A Hoyne; Kellie A Cartledge; Tam M Pham; Jennifer L Lewis; Sonia E Sankovich; Violet Stoichevska; Elizabeth Da Silva; Christine P Robinson; Maurice J Frenkel; Lindsay G Sparrow; Ross T Fernley; V Chandana Epa; Colin W Ward
Journal:  Nature       Date:  2006-09-06       Impact factor: 49.962

Review 4.  Intrinsically disordered proteins: a 10-year recap.

Authors:  Peter Tompa
Journal:  Trends Biochem Sci       Date:  2012-09-16       Impact factor: 13.807

5.  Evidence for the location of the allosteric activation switch in the multisubunit phosphorylase kinase complex from mass spectrometric identification of chemically crosslinked peptides.

Authors:  Owen W Nadeau; David W Anderson; Qing Yang; Antonio Artigues; Justin E Paschall; Gerald J Wyckoff; Jennifer L McClintock; Gerald M Carlson
Journal:  J Mol Biol       Date:  2006-10-21       Impact factor: 5.469

Review 6.  Ligand-induced activation of the insulin receptor: a multi-step process involving structural changes in both the ligand and the receptor.

Authors:  Colin W Ward; Michael C Lawrence
Journal:  Bioessays       Date:  2009-04       Impact factor: 4.345

Review 7.  The insulin and EGF receptor structures: new insights into ligand-induced receptor activation.

Authors:  Colin W Ward; Michael C Lawrence; Victor A Streltsov; Timothy E Adams; Neil M McKern
Journal:  Trends Biochem Sci       Date:  2007-02-05       Impact factor: 13.807

Review 8.  Insulin receptor structure and its implications for the IGF-1 receptor.

Authors:  Michael C Lawrence; Neil M McKern; Colin W Ward
Journal:  Curr Opin Struct Biol       Date:  2007-09-11       Impact factor: 6.809

Review 9.  Nutrient and hormonal regulation of pyruvate kinase gene expression.

Authors:  K Yamada; T Noguchi
Journal:  Biochem J       Date:  1999-01-01       Impact factor: 3.857

10.  DisProt: the Database of Disordered Proteins.

Authors:  Megan Sickmeier; Justin A Hamilton; Tanguy LeGall; Vladimir Vacic; Marc S Cortese; Agnes Tantos; Beata Szabo; Peter Tompa; Jake Chen; Vladimir N Uversky; Zoran Obradovic; A Keith Dunker
Journal:  Nucleic Acids Res       Date:  2006-12-01       Impact factor: 16.971

View more
  3 in total

1.  Digested disorder, Quarterly intrinsic disorder digest (October-November-December, 2013).

Authors:  Shelly DeForte; Krishna D Reddy; Vladimir N Uversky
Journal:  Intrinsically Disord Proteins       Date:  2015-03-09

2.  Elucidation of Ligand-Dependent Modulation of Disorder-Order Transitions in the Oncoprotein MDM2.

Authors:  Juan A Bueren-Calabuig; Julien Michel
Journal:  PLoS Comput Biol       Date:  2015-06-05       Impact factor: 4.475

3.  Cancer/testis antigen PAGE4, a regulator of c-Jun transactivation, is phosphorylated by homeodomain-interacting protein kinase 1, a component of the stress-response pathway.

Authors:  Steven M Mooney; Ruoyi Qiu; John J Kim; Elizabeth J Sacho; Krithika Rajagopalan; Dorhyun Johng; Takumi Shiraishi; Prakash Kulkarni; Keith R Weninger
Journal:  Biochemistry       Date:  2014-03-05       Impact factor: 3.162

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.