Literature DB >> 23519808

Crystallization and preliminary X-ray diffraction analysis of three recombinant mutants of Vaccinia virus uracil DNA glycosylase.

Darika Sartmatova1, Taishayla Nash, Norbert Schormann, Manunya Nuth, Robert Ricciardi, Surajit Banerjee, Debasish Chattopadhyay.   

Abstract

Amino-acid residues located at a highly flexible area in the uracil DNA glycosylase of Vaccinia virus were mutated. In the crystal structure of wild-type D4 these residues lie at the dimer interface. Specifically, three mutants were generated: (i) residue Arg167 was replaced with an alanine (R167AD4), (ii) residues Glu171, Ser172 and Pro173 were substituted with three glycine residues (3GD4) and (iii) residues Glu171 and Ser172 were deleted (Δ171-172D4). Mutant proteins were expressed, purified and crystallized in order to investigate the effects of these mutations on the structure of the protein.

Entities:  

Keywords:  Vaccinia virus; uracil DNA glycosylase

Mesh:

Substances:

Year:  2013        PMID: 23519808      PMCID: PMC3606578          DOI: 10.1107/S1744309113002716

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  12 in total

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Journal:  Virology       Date:  2002-11-25       Impact factor: 3.616

3.  Vaccinia virus uracil DNA glycosylase interacts with the A20 protein to form a heterodimeric processivity factor for the viral DNA polymerase.

Authors:  Eleni S Stanitsa; Lisa Arps; Paula Traktman
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4.  Vaccinia virus uracil DNA glycosylase has an essential role in DNA synthesis that is independent of its glycosylase activity: catalytic site mutations reduce virulence but not virus replication in cultured cells.

Authors:  Frank S De Silva; Bernard Moss
Journal:  J Virol       Date:  2003-01       Impact factor: 5.103

5.  Vaccinia virus D4 mutants defective in processive DNA synthesis retain binding to A20 and DNA.

Authors:  Abigail M Druck Shudofsky; Janice Elaine Y Silverman; Debasish Chattopadhyay; Robert P Ricciardi
Journal:  J Virol       Date:  2010-09-22       Impact factor: 5.103

6.  Purification and characterization of a cold-adapted uracil-DNA glycosylase from Atlantic cod (Gadus morhua).

Authors:  O Lanes; P H Guddal; D R Gjellesvik; N P Willassen
Journal:  Comp Biochem Physiol B Biochem Mol Biol       Date:  2000-11       Impact factor: 2.231

7.  Nuclear and mitochondrial forms of human uracil-DNA glycosylase are encoded by the same gene.

Authors:  G Slupphaug; F H Markussen; L C Olsen; R Aasland; N Aarsaether; O Bakke; H E Krokan; D E Helland
Journal:  Nucleic Acids Res       Date:  1993-06-11       Impact factor: 16.971

8.  Low-resolution structure of vaccinia virus DNA replication machinery.

Authors:  Céleste Sèle; Frank Gabel; Irina Gutsche; Ivan Ivanov; Wim P Burmeister; Frédéric Iseni; Nicolas Tarbouriech
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9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  Crystal structure of vaccinia virus uracil-DNA glycosylase reveals dimeric assembly.

Authors:  Norbert Schormann; Alexei Grigorian; Alexandra Samal; Raman Krishnan; Lawrence DeLucas; Debasish Chattopadhyay
Journal:  BMC Struct Biol       Date:  2007-07-02
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Authors:  Maciej W Czarnecki; Paula Traktman
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Review 2.  Poxvirus uracil-DNA glycosylase-An unusual member of the family I uracil-DNA glycosylases.

Authors:  Norbert Schormann; Natalia Zhukovskaya; Gregory Bedwell; Manunya Nuth; Richard Gillilan; Peter E Prevelige; Robert P Ricciardi; Surajit Banerjee; Debasish Chattopadhyay
Journal:  Protein Sci       Date:  2016-11-02       Impact factor: 6.725

3.  X-ray transparent microfluidic platforms for membrane protein crystallization with microseeds.

Authors:  Jeremy M Schieferstein; Ashtamurthy S Pawate; Michael J Varel; Sudipto Guha; Ieva Astrauskaite; Robert B Gennis; Paul J A Kenis
Journal:  Lab Chip       Date:  2018-03-13       Impact factor: 6.799

4.  Binding of undamaged double stranded DNA to vaccinia virus uracil-DNA Glycosylase.

Authors:  Norbert Schormann; Surajit Banerjee; Robert Ricciardi; Debasish Chattopadhyay
Journal:  BMC Struct Biol       Date:  2015-06-02
  4 in total

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