Literature DB >> 23514171

Enumeration of RNA complexes via random matrix theory.

Jørgen E Andersen1, Leonid O Chekhov, Robert C Penner, Christian M Reidys, Piotr Sułkowski.   

Abstract

In the present article, we review a derivation of the numbers of RNA complexes of an arbitrary topology. These numbers are encoded in the free energy of the Hermitian matrix model with potential V(x)=x2/2-stx/(1-tx), where s and t are respective generating parameters for the number of RNA molecules and hydrogen bonds in a given complex. The free energies of this matrix model are computed using the so-called topological recursion, which is a powerful new formalism arising from random matrix theory. These numbers of RNA complexes also have profound meaning in mathematics: they provide the number of chord diagrams of fixed genus with specified numbers of backbones and chords as well as the number of cells in Riemann's moduli spaces for bordered surfaces of fixed topological type.

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Year:  2013        PMID: 23514171     DOI: 10.1042/BST20120270

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  2 in total

1.  Genus for biomolecules.

Authors:  Paweł Rubach; Sebastian Zajac; Borys Jastrzebski; Joanna I Sulkowska; Piotr Sułkowski
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

2.  Genus trace reveals the topological complexity and domain structure of biomolecules.

Authors:  Sebastian Zając; Cody Geary; Ebbe Sloth Andersen; Pawel Dabrowski-Tumanski; Joanna I Sulkowska; Piotr Sułkowski
Journal:  Sci Rep       Date:  2018-12-03       Impact factor: 4.379

  2 in total

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