Literature DB >> 23498601

The proteasome under the microscope: the regulatory particle in focus.

Gabriel C Lander1, Andreas Martin, Eva Nogales.   

Abstract

Since first imaged by electron microscopy, much effort has been placed into determining the structure and mechanism of the 26S proteasome. While the proteolytic core is understood in atomic detail, how substrates are engaged and transported to this core remains elusive. Substrate delivery is accomplished by a 19-subunit regulatory particle that binds to ubiquitinated substrates, detaches ubiquitin tags, unfolds the substrate, and translocates it into the peptidase in an ATP-dependent fashion. Recently, several labs have determined subnanometer cryoEM structures of the 26S proteasome, shedding light on the architecture of the regulatory complex. We discuss the biological insights into substrate processing provided by these structures, and the technical hurdles ahead to achieve an atomic resolution structure of the 26 proteasome.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23498601      PMCID: PMC3676703          DOI: 10.1016/j.sbi.2013.02.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  42 in total

1.  Recognition of the polyubiquitin proteolytic signal.

Authors:  J S Thrower; L Hoffman; M Rechsteiner; C M Pickart
Journal:  EMBO J       Date:  2000-01-04       Impact factor: 11.598

2.  Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome.

Authors:  Rati Verma; L Aravind; Robert Oania; W Hayes McDonald; John R Yates; Eugene V Koonin; Raymond J Deshaies
Journal:  Science       Date:  2002-08-15       Impact factor: 47.728

3.  Mechanism of DNA translocation in a replicative hexameric helicase.

Authors:  Eric J Enemark; Leemor Joshua-Tor
Journal:  Nature       Date:  2006-07-20       Impact factor: 49.962

4.  Automated cryoelectron microscopy of "single particles" applied to the 26S proteasome.

Authors:  Stephan Nickell; Florian Beck; Andreas Korinek; Oana Mihalache; Wolfgang Baumeister; Jürgen M Plitzko
Journal:  FEBS Lett       Date:  2007-05-21       Impact factor: 4.124

5.  Proteasome subunit Rpn13 is a novel ubiquitin receptor.

Authors:  Koraljka Husnjak; Suzanne Elsasser; Naixia Zhang; Xiang Chen; Leah Randles; Yuan Shi; Kay Hofmann; Kylie J Walters; Daniel Finley; Ivan Dikic
Journal:  Nature       Date:  2008-05-22       Impact factor: 49.962

6.  Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction.

Authors:  Patrick Schreiner; Xiang Chen; Koraljka Husnjak; Leah Randles; Naixia Zhang; Suzanne Elsasser; Daniel Finley; Ivan Dikic; Kylie J Walters; Michael Groll
Journal:  Nature       Date:  2008-05-22       Impact factor: 49.962

7.  The crystal structure of the human Mov34 MPN domain reveals a metal-free dimer.

Authors:  Mario Sanches; Beatriz S C Alves; Nilson I T Zanchin; Beatriz G Guimarães
Journal:  J Mol Biol       Date:  2007-05-10       Impact factor: 5.469

8.  MPN+, a putative catalytic motif found in a subset of MPN domain proteins from eukaryotes and prokaryotes, is critical for Rpn11 function.

Authors:  Vered Maytal-Kivity; Noa Reis; Kay Hofmann; Michael H Glickman
Journal:  BMC Biochem       Date:  2002-09-20       Impact factor: 4.059

9.  Substrate selection by the proteasome during degradation of protein complexes.

Authors:  Sumit Prakash; Tomonao Inobe; Ace Joseph Hatch; Andreas Matouschek
Journal:  Nat Chem Biol       Date:  2008-11-23       Impact factor: 15.040

10.  Structure of the human 26S proteasome: subunit radial displacements open the gate into the proteolytic core.

Authors:  Paula C A da Fonseca; Edward P Morris
Journal:  J Biol Chem       Date:  2008-06-05       Impact factor: 5.157

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  20 in total

1.  Proteomic Analysis Identifies Ribosome Reduction as an Effective Proteotoxic Stress Response.

Authors:  Angel Guerra-Moreno; Marta Isasa; Meera K Bhanu; David P Waterman; Vinay V Eapen; Steven P Gygi; John Hanna
Journal:  J Biol Chem       Date:  2015-10-21       Impact factor: 5.157

2.  The proteasome-associated protein Ecm29 inhibits proteasomal ATPase activity and in vivo protein degradation by the proteasome.

Authors:  Alina De La Mota-Peynado; Stella Yu-Chien Lee; Brianne Marie Pierce; Prashant Wani; Chingakham Ranjit Singh; Jeroen Roelofs
Journal:  J Biol Chem       Date:  2013-08-30       Impact factor: 5.157

3.  Slippery substrates impair ATP-dependent protease function by slowing unfolding.

Authors:  Daniel A Kraut
Journal:  J Biol Chem       Date:  2013-10-22       Impact factor: 5.157

Review 4.  Regulated protein turnover: snapshots of the proteasome in action.

Authors:  Sucharita Bhattacharyya; Houqing Yu; Carsten Mim; Andreas Matouschek
Journal:  Nat Rev Mol Cell Biol       Date:  2014-02       Impact factor: 94.444

5.  High-resolution cryo-EM structure of the proteasome in complex with ADP-AlFx.

Authors:  Zhanyu Ding; Zhenglin Fu; Cong Xu; Yifan Wang; Yanxing Wang; Junrui Li; Liangliang Kong; Jinhuan Chen; Na Li; Rongguang Zhang; Yao Cong
Journal:  Cell Res       Date:  2017-01-20       Impact factor: 25.617

Review 6.  The Logic of the 26S Proteasome.

Authors:  Galen Andrew Collins; Alfred L Goldberg
Journal:  Cell       Date:  2017-05-18       Impact factor: 41.582

7.  A reversible and highly selective inhibitor of the proteasomal ubiquitin receptor rpn13 is toxic to multiple myeloma cells.

Authors:  Darci J Trader; Scott Simanski; Thomas Kodadek
Journal:  J Am Chem Soc       Date:  2015-05-08       Impact factor: 15.419

8.  UBL domain of Usp14 and other proteins stimulates proteasome activities and protein degradation in cells.

Authors:  Hyoung Tae Kim; Alfred L Goldberg
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-28       Impact factor: 11.205

9.  Structure of the human 26S proteasome at a resolution of 3.9 Å.

Authors:  Andreas Schweitzer; Antje Aufderheide; Till Rudack; Florian Beck; Günter Pfeifer; Jürgen M Plitzko; Eri Sakata; Klaus Schulten; Friedrich Förster; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-24       Impact factor: 11.205

10.  Site-specific labeling of proteins for electron microscopy.

Authors:  Corey M Dambacher; Gabriel C Lander
Journal:  J Struct Biol       Date:  2015-09-25       Impact factor: 2.867

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