Literature DB >> 23489162

Effect of distal interactions on O2 binding to heme.

Kasper P Kepp1, Pouria Dasmeh.   

Abstract

This paper reports DFT-computed electronic ground states, Mössbauer isomer shifts, O-O and Fe-O vibration frequencies, and thermodynamics of O2 binding of heme models representing different distal (position E7) interactions, strictly validated against experimental data. Based on the results, the impact of specific types of distal interactions on oxyheme electronic structure can be systematized. Hydrogen bonding increases back-donation, O-O bond activation, and oxygen binding affinity. The heme side chains reduce isomer shifts by -0.06 mm/s due to electron withdrawal from iron, and distal hydrogen bonds can further reduce isomer shifts up to 0.07 mm/s. The O-O stretch vibration, the O-O distance, and the isomer shift possess substantial heuristic value in interpreting electronic structure, whereas other properties are less effective, based on computed correlation coefficients. Shorter Fe-O bond length does not correlate with O2 affinity, as hydrogen bonding elongates both Fe-O and O-O bonds by ~0.01-0.02 Å, contrary to the situation absent from distal hydrogen bonds and of potential relevance to ligand activation where distal interactions are involved. An ionic (Weiss-type) model of Fe-O bonding combined with electron withdrawal by hydrogen bonds is shown to robustly explain the structural, spectroscopic, and thermodynamic properties of the hemes. The identified correlations may be useful, e.g., for designing O2-activating catalysts or for diagnosing heme protein variants.

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Year:  2013        PMID: 23489162     DOI: 10.1021/jp400260u

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  8 in total

1.  Resonant inelastic X-ray scattering determination of the electronic structure of oxyhemoglobin and its model complex.

Authors:  James J Yan; Thomas Kroll; Michael L Baker; Samuel A Wilson; Richard Decréau; Marcus Lundberg; Dimosthenis Sokaras; Pieter Glatzel; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-04       Impact factor: 11.205

2.  DFT Fea3-O/O-O Vibrational Frequency Calculations over Catalytic Reaction Cycle States in the Dinuclear Center of Cytochrome c Oxidase.

Authors:  Wen-Ge Han Du; Andreas W Götz; Louis Noodleman
Journal:  Inorg Chem       Date:  2019-09-30       Impact factor: 5.165

3.  Electronic effects of the substituent on the dioxygen-activating abilities of substituted iron tetraphenylporphyrins: a theoretical study.

Authors:  Haiyan Fu; Meijuan Cao; Yuanbin She; Zhicheng Sun; Yanmin Yu
Journal:  J Mol Model       Date:  2015-03-19       Impact factor: 1.810

4.  The McClure and Weiss models of Fe-O2 bonding for oxyhemes, and the HbO2 + NO reaction.

Authors:  Richard D Harcourt
Journal:  J Biol Inorg Chem       Date:  2013-12-07       Impact factor: 3.358

5.  Spin Interconversion of Heme-Peroxo-Copper Complexes Facilitated by Intramolecular Hydrogen-Bonding Interactions.

Authors:  Andrew W Schaefer; Melanie A Ehudin; David A Quist; Joel A Tang; Kenneth D Karlin; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2019-03-14       Impact factor: 15.419

6.  The secondary coordination sphere and axial ligand effects on oxygen reduction reaction by iron porphyrins: a DFT computational study.

Authors:  Takehiro Ohta; Perumandla Nagaraju; Jin-Gang Liu; Takashi Ogura; Yoshinori Naruta
Journal:  J Biol Inorg Chem       Date:  2016-08-09       Impact factor: 3.358

Review 7.  Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function.

Authors:  Suzanne M Adam; Gayan B Wijeratne; Patrick J Rogler; Daniel E Diaz; David A Quist; Jeffrey J Liu; Kenneth D Karlin
Journal:  Chem Rev       Date:  2018-10-29       Impact factor: 60.622

8.  Insights into the effect of distal histidine and water hydrogen bonding on NO ligation to ferrous and ferric heme: a DFT study.

Authors:  Fatemeh Fateminasab; Aurelien de la Lande; Reza Omidyan
Journal:  RSC Adv       Date:  2022-02-08       Impact factor: 3.361

  8 in total

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