Literature DB >> 23486282

Leveling Waddington: the emergence of direct programming and the loss of cell fate hierarchies.

Julia Ladewig1, Philipp Koch, Oliver Brüstle.   

Abstract

For decades, Waddington's concept of the 'epigenetic landscape' has served as an educative hierarchical model to illustrate the progressive restriction of cell differentiation potential during normal development. While still being highly valuable in the context of normal development, the Waddington model falls short of accommodating recent breakthroughs in cell programming. The advent of induced pluripotent stem (iPS) cells and advances in direct cell fate conversion (also known as transdifferentiation) suggest that somatic and pluripotent cell fates can be interconverted without transiting through distinct hierarchies. We propose a non-hierarchical 'epigenetic disc' model to explain such cell fate transitions, which provides an alternative landscape for modelling cell programming and reprogramming.

Mesh:

Year:  2013        PMID: 23486282     DOI: 10.1038/nrm3543

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  112 in total

1.  Neural stem cells directly differentiated from partially reprogrammed fibroblasts rapidly acquire gliogenic competency.

Authors:  Takeshi Matsui; Morito Takano; Kenji Yoshida; Soichiro Ono; Chikako Fujisaki; Yumi Matsuzaki; Yoshiaki Toyama; Masaya Nakamura; Hideyuki Okano; Wado Akamatsu
Journal:  Stem Cells       Date:  2012-06       Impact factor: 6.277

Review 2.  Gene regulatory networks in the evolution and development of the heart.

Authors:  Eric N Olson
Journal:  Science       Date:  2006-09-29       Impact factor: 47.728

3.  Reciprocal activation of GATA-1 and PU.1 marks initial specification of hematopoietic stem cells into myeloerythroid and myelolymphoid lineages.

Authors:  Yojiro Arinobu; Shin-ichi Mizuno; Yong Chong; Hirokazu Shigematsu; Tadafumi Iino; Hiromi Iwasaki; Thomas Graf; Robin Mayfield; Susan Chan; Philippe Kastner; Koichi Akashi
Journal:  Cell Stem Cell       Date:  2007-10-11       Impact factor: 24.633

4.  PU.1 induces myeloid lineage commitment in multipotent hematopoietic progenitors.

Authors:  C Nerlov; T Graf
Journal:  Genes Dev       Date:  1998-08-01       Impact factor: 11.361

5.  GATA-1 reprograms avian myelomonocytic cell lines into eosinophils, thromboblasts, and erythroblasts.

Authors:  H Kulessa; J Frampton; T Graf
Journal:  Genes Dev       Date:  1995-05-15       Impact factor: 11.361

6.  Neurogenin3 is sufficient for transdetermination of hepatic progenitor cells into neo-islets in vivo but not transdifferentiation of hepatocytes.

Authors:  Vijay Yechoor; Victoria Liu; Christie Espiritu; Antoni Paul; Kazuhiro Oka; Hideto Kojima; Lawrence Chan
Journal:  Dev Cell       Date:  2009-03       Impact factor: 12.270

7.  Embryonic lethality, decreased erythropoiesis, and defective octamer-dependent promoter activation in Oct-1-deficient mice.

Authors:  Victoria E H Wang; Tara Schmidt; Jianzhu Chen; Phillip A Sharp; Dean Tantin
Journal:  Mol Cell Biol       Date:  2004-02       Impact factor: 4.272

8.  Functional properties of neurons derived from in vitro reprogrammed postnatal astroglia.

Authors:  Benedikt Berninger; Marcos R Costa; Ursula Koch; Timm Schroeder; Bernd Sutor; Benedikt Grothe; Magdalena Götz
Journal:  J Neurosci       Date:  2007-08-08       Impact factor: 6.167

9.  Glial cells generate neurons: the role of the transcription factor Pax6.

Authors:  Nico Heins; Paolo Malatesta; Francesco Cecconi; Masato Nakafuku; Kerry Lee Tucker; Michael A Hack; Prisca Chapouton; Yves-Alain Barde; Magdalena Götz
Journal:  Nat Neurosci       Date:  2002-04       Impact factor: 24.884

10.  In vivo reprogramming of adult pancreatic exocrine cells to beta-cells.

Authors:  Qiao Zhou; Juliana Brown; Andrew Kanarek; Jayaraj Rajagopal; Douglas A Melton
Journal:  Nature       Date:  2008-08-27       Impact factor: 49.962

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  75 in total

1.  Unabridged Analysis of Human Histone H3 by Differential Top-Down Mass Spectrometry Reveals Hypermethylated Proteoforms from MMSET/NSD2 Overexpression.

Authors:  Yupeng Zheng; Luca Fornelli; Philip D Compton; Seema Sharma; Jesse Canterbury; Christopher Mullen; Vlad Zabrouskov; Ryan T Fellers; Paul M Thomas; Jonathan D Licht; Michael W Senko; Neil L Kelleher
Journal:  Mol Cell Proteomics       Date:  2015-08-13       Impact factor: 5.911

2.  Genomic instability during reprogramming by nuclear transfer is DNA replication dependent.

Authors:  Gloryn Chia; Judith Agudo; Nathan Treff; Mark V Sauer; David Billing; Brian D Brown; Richard Baer; Dieter Egli
Journal:  Nat Cell Biol       Date:  2017-03-06       Impact factor: 28.824

3.  Cas9 effector-mediated regulation of transcription and differentiation in human pluripotent stem cells.

Authors:  Nicola A Kearns; Ryan M J Genga; Metewo S Enuameh; Manuel Garber; Scot A Wolfe; René Maehr
Journal:  Development       Date:  2014-01       Impact factor: 6.868

4.  Pruning of the adipocyte peroxisome proliferator-activated receptor γ cistrome by hematopoietic master regulator PU.1.

Authors:  Joanna R Dispirito; Bin Fang; Fenfen Wang; Mitchell A Lazar
Journal:  Mol Cell Biol       Date:  2013-06-17       Impact factor: 4.272

5.  Program specificity for Ptf1a in pancreas versus neural tube development correlates with distinct collaborating cofactors and chromatin accessibility.

Authors:  David M Meredith; Mark D Borromeo; Tye G Deering; Bradford H Casey; Trisha K Savage; Paul R Mayer; Chinh Hoang; Kuang-Chi Tung; Manonmani Kumar; Chengcheng Shen; Galvin H Swift; Raymond J Macdonald; Jane E Johnson
Journal:  Mol Cell Biol       Date:  2013-06-10       Impact factor: 4.272

Review 6.  Lineage specification in the fly nervous system and evolutionary implications.

Authors:  Pierre B Cattenoz; Angela Giangrande
Journal:  Cell Cycle       Date:  2013-08-07       Impact factor: 4.534

7.  DMRT1 protects male gonadal cells from retinoid-dependent sexual transdifferentiation.

Authors:  Anna Minkina; Clinton K Matson; Robin E Lindeman; Norbert B Ghyselinck; Vivian J Bardwell; David Zarkower
Journal:  Dev Cell       Date:  2014-05-22       Impact factor: 12.270

Review 8.  Pluripotent stem cells in regenerative medicine: challenges and recent progress.

Authors:  Viviane Tabar; Lorenz Studer
Journal:  Nat Rev Genet       Date:  2014-02       Impact factor: 53.242

Review 9.  Brains in metamorphosis: reprogramming cell identity within the central nervous system.

Authors:  Paola Arlotta; Benedikt Berninger
Journal:  Curr Opin Neurobiol       Date:  2014-05-04       Impact factor: 6.627

Review 10.  Current status in cancer cell reprogramming and its clinical implications.

Authors:  Kenan Izgi; Halit Canatan; Banu Iskender
Journal:  J Cancer Res Clin Oncol       Date:  2016-09-12       Impact factor: 4.553

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