Literature DB >> 23485419

Virus assembly and maturation: auto-regulation through allosteric molecular switches.

Tatiana Domitrovic1, Navid Movahed, Brian Bothner, Tsutomu Matsui, Qiu Wang, Peter C Doerschuk, John E Johnson.   

Abstract

We generalize the concept of allostery from the traditional non-active-site control of enzymes to virus maturation. Virtually, all animal viruses transition from a procapsid noninfectious state to a mature infectious state. The procapsid contains an encoded chemical program that is executed following an environmental cue. We developed an exceptionally accessible virus system for the study of the activators of maturation and the downstream consequences that result in particle stability and infectivity. Nudaurelia capensis omega virus (NωV) is a T=4 icosahedral virus that undergoes a dramatic maturation in which the 490-Å spherical procapsid condenses to a 400-Å icosahedral-shaped capsid with associated specific auto-proteolysis and stabilization. Employing X-ray crystallography, time-resolved electron cryo-microscopy and hydrogen/deuterium exchange as well as biochemistry, it was possible to define the mechanisms of allosteric communication among the four quasi-equivalent subunits in the icosahedral asymmetric unit. These gene products undergo proteolysis at different rates, dependent on quaternary structure environment, while particle stability is conferred globally following only a few local subunit transitions. We show that there is a close similarity between the concepts of tensegrity (associated with geodesic domes and mechanical engineering) and allostery (associated with biochemical control mechanisms).
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23485419      PMCID: PMC3664304          DOI: 10.1016/j.jmb.2013.02.021

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  32 in total

1.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

2.  Balanced electrostatic and structural forces guide the large conformational change associated with maturation of T = 4 virus.

Authors:  Tsutomu Matsui; Hiro Tsuruta; John E Johnson
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

3.  Dynamic allostery controls coat protein conformer switching during MS2 phage assembly.

Authors:  E C Dykeman; P G Stockley; R Twarock
Journal:  J Mol Biol       Date:  2009-11-12       Impact factor: 5.469

4.  Folding and particle assembly are disrupted by single-point mutations near the autocatalytic cleavage site of Nudaurelia capensis omega virus capsid protein.

Authors:  Derek J Taylor; John E Johnson
Journal:  Protein Sci       Date:  2005-02       Impact factor: 6.725

5.  Subunits fold at position-dependent rates during maturation of a eukaryotic RNA virus.

Authors:  Tsutomu Matsui; Gabriel C Lander; Reza Khayat; John E Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-26       Impact factor: 11.205

6.  Conformational changes in the hepatitis B virus core protein are consistent with a role for allostery in virus assembly.

Authors:  Charles Packianathan; Sarah P Katen; Charles E Dann; Adam Zlotnick
Journal:  J Virol       Date:  2009-11-25       Impact factor: 5.103

7.  Dynamics and stability in maturation of a T=4 virus.

Authors:  Jinghua Tang; Kelly K Lee; Brian Bothner; Timothy S Baker; Mark Yeager; John E Johnson
Journal:  J Mol Biol       Date:  2009-07-20       Impact factor: 5.469

Review 8.  Virus maturation as a new HIV-1 therapeutic target.

Authors:  Catherine S Adamson; Karl Salzwedel; Eric O Freed
Journal:  Expert Opin Ther Targets       Date:  2009-08       Impact factor: 6.902

Review 9.  Dealing with low pH: entry and exit of alphaviruses and flaviviruses.

Authors:  Claudia Sánchez-San Martín; Catherine Y Liu; Margaret Kielian
Journal:  Trends Microbiol       Date:  2009-09-30       Impact factor: 17.079

10.  Mutually-induced conformational switching of RNA and coat protein underpins efficient assembly of a viral capsid.

Authors:  Óttar Rolfsson; Katerina Toropova; Neil A Ranson; Peter G Stockley
Journal:  J Mol Biol       Date:  2010-08-13       Impact factor: 5.469

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  16 in total

Review 1.  50 years of allosteric interactions: the twists and turns of the models.

Authors:  Jean-Pierre Changeux
Journal:  Nat Rev Mol Cell Biol       Date:  2013-10-23       Impact factor: 94.444

2.  Allosteric Autoinhibition Pathway in Transcription Factor ERG: Dynamics Network and Mutant Experimental Evaluations.

Authors:  Wei Ye; Tianle Qian; Hao Liu; Ray Luo; Hai-Feng Chen
Journal:  J Chem Inf Model       Date:  2017-04-25       Impact factor: 4.956

3.  Honey Bee Deformed Wing Virus Structures Reveal that Conformational Changes Accompany Genome Release.

Authors:  Lindsey J Organtini; Kristin L Shingler; Robert E Ashley; Elizabeth A Capaldi; Kulsoom Durrani; Kelly A Dryden; Alexander M Makhov; James F Conway; Marie C Pizzorno; Susan Hafenstein
Journal:  J Virol       Date:  2017-01-03       Impact factor: 5.103

4.  Autoregulation of SafA Assembly through Recruitment of a Protein Cross-Linking Enzyme.

Authors:  Catarina G Fernandes; Charles P Moran; Adriano O Henriques
Journal:  J Bacteriol       Date:  2018-06-25       Impact factor: 3.490

Review 5.  HDX-MS guided drug discovery: small molecules and biopharmaceuticals.

Authors:  David P Marciano; Venkatasubramanian Dharmarajan; Patrick R Griffin
Journal:  Curr Opin Struct Biol       Date:  2014-08-30       Impact factor: 6.809

6.  Isotope Labeling of Biomolecules: Structural Analysis of Viruses by HDX-MS.

Authors:  Miklos Guttman; Kelly K Lee
Journal:  Methods Enzymol       Date:  2015-07-04       Impact factor: 1.600

7.  Analytical Techniques to Characterize the Structure, Properties, and Assembly of Virus Capsids.

Authors:  Panagiotis Kondylis; Christopher J Schlicksup; Adam Zlotnick; Stephen C Jacobson
Journal:  Anal Chem       Date:  2018-12-03       Impact factor: 6.986

Review 8.  The molecular biology of Bluetongue virus replication.

Authors:  Avnish Patel; Polly Roy
Journal:  Virus Res       Date:  2013-12-25       Impact factor: 3.303

9.  Dynamic allostery governs cyclophilin A-HIV capsid interplay.

Authors:  Manman Lu; Guangjin Hou; Huilan Zhang; Christopher L Suiter; Jinwoo Ahn; In-Ja L Byeon; Juan R Perilla; Christopher J Langmead; Ivan Hung; Peter L Gor'kov; Zhehong Gan; William Brey; Christopher Aiken; Peijun Zhang; Klaus Schulten; Angela M Gronenborn; Tatyana Polenova
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-09       Impact factor: 11.205

10.  Plant-expressed virus-like particles reveal the intricate maturation process of a eukaryotic virus.

Authors:  Roger Castells-Graells; Jonas R S Ribeiro; Tatiana Domitrovic; Emma L Hesketh; Charlotte A Scarff; John E Johnson; Neil A Ranson; David M Lawson; George P Lomonossoff
Journal:  Commun Biol       Date:  2021-05-24
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