| Literature DB >> 23480670 |
Kurt Hulyam1, Bayramoglu Aysegul, Gunes Hasan Veysi, Ozbabalik Demet, Degirmenci Irfan, Colak Ertugrul, Cosan Turgut Didem, Bayram Banu, Dikmen Miris.
Abstract
This study was performed in acute stroke patients in the Turkish population to determine the frequency of the A1166C polymorphism in the AT1 gene and to examine the role of this polymorphism in acute stroke development. In this study, 257 genomic DNA samples were analysed (from 206 acute stroke patients and 51 healthy individuals). Genomic DNA was prepared from peripheral blood using the salt-extraction method. The presence of the A1166C polymorphism in the AT1 gene was determined using the polymerase chain reaction (PCR)-restriction fragment length polymorphism (RFLP) method. PCR products were separated by 2% agarose gel electrophoresis and visualized by a charge-coupled device (CCD) camera. In this study, the allele frequency at the A1166C position was 92% A and 8% C for control and 97% A and 3% C for patients. This difference in allele frequency between the control group and the patient group was not statistically significant. However, genotype and allele frequencies showed a significant difference (P < 0.001) in the control and the patient groups. The results of this study show no relationship between the A1166C polymorphism in the AT1 gene and acute stroke in the Turkish population.Entities:
Mesh:
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Year: 2013 PMID: 23480670 PMCID: PMC3822648 DOI: 10.1111/jcmm.12017
Source DB: PubMed Journal: J Cell Mol Med ISSN: 1582-1838 Impact factor: 5.310
PCR mixture (one sample) and PCR condition
| PCR condition | |||||
|---|---|---|---|---|---|
| PCR mixture | Step | Time | Temperature (+) | Cycles | |
| Primer 1 | 2 pmol | Sense: 5′- AGAAGCCTGCACCATGTTTTGAG -3′ | |||
| Primer 2 | 2 pmol | Antisense: 5′- CCTGTTGCTCCTCTAACGATTTA -3′ | |||
| dNTP mix | 0.2 mM | 4 min. | 94°C | ||
| PCR buffer | 30 | ||||
| Tris-HCl | 10 mM | Denaturation | 20 sec. | 94°C | |
| KCl | 50 mM | Annealing | 30 sec. | 62°C | |
| Taq pol | 2 U | Extension | 30 sec. | 72°C | |
| H2O (distilled) | 9 μl | Final extension | 5 min. | 72°C | |
| DNA | 0.5–1 μg | – | 4°C | – | |
Fig. 1RFLP analysis of the A1166C mutation. The prototype fragment has 410 bp. The figure demonstrates M: Marker, AC: heterozygous mutant (1. sample), AA: homozygous normal (2, 3, 4, 5, 6, 7, 8, 9, 10 samples) genotypes.
Distribution of genotypes and alleles according to stage of controls, total patients and patient subgroups
| Genotypes | Alleles | |||||
|---|---|---|---|---|---|---|
| AA, n (%) | AC, n (%) | A, n (%) | C, n (%) | |||
| Control | 43 (84.3) | 8 (15.7) | 94 (92.15) | 8 (7.85) | ||
| Patients | 194(94.2) | 12 (5.8) | 400 (97) | 12 (3) | ||
Two Proportions z test.
One Proportion exact test, a: Control versus Patient in each Genotypes, b: AA versus AC in each groups, c: Control versus Patient in each Alleles, d: A versus C in each groups.
Pearson Exact Chi-Square.
Distribution of AT1 gene A1166C polymorphism genotypes according to individual features of controls and patients
| Individual features | Groups | AA (%) | AC (%) | Statistic |
|---|---|---|---|---|
| Hypertension | Controls | 92.3 | 7.7 | |
| Patients | 92 | 8 | ||
| Smoking | Controls | 87.5 | 12.5 | |
| Patients | 96 | 4 | ||
| Alcohol use | Controls | 0 | 0 | |
| Patients | 92.9 | 7.1 | ||
| History of stroke | Controls | 0 | 0 | |
| Patients | 85.7 | 14.3 | ||
| Trauma | Controls | 100 | 0 | |
| Patients | 95 | 5 | ||
| Heart disease | Controls | 77.8 | 22.2 | |
| Patients | 92.1 | 7.9 | ||
| Vessel disease | Controls | 0 | 0 | |
| Patients | 95.1 | 4.9 | ||
| Diabetes | Controls | 81.8 | 18.2 | |
| Patients | 93.9 | 6.1 | ||
| Renal disease | Controls | 0 | 0 | |
| Patients | 91.7 | 8.3 |
One Proportion exact test.
Could not be statistically analysed because of genotype quantity.
Distribution of AT1 gene A1166C polymorphism genotypes according to some physiological and clinical parameters of controls and patients
| Parameters | AA | AC | Statistics | |
|---|---|---|---|---|
| AA-AC | ||||
| Age (year) | Controls | |||
| Patients | ||||
| Weight (kg) | Controls | |||
| Patients | ||||
| Systolic blood pressure (mmHg) | Controls | |||
| Patients | ||||
| Diastolic blood pressure (mmHg) | Controls | |||
| Patients | ||||
| Creatinine (mg/dl) | Controls | |||
| Patients | ||||
| High Density Lipoprotein (HDL-C) (mg/dl) | Controls | |||
| Patients | ||||
| Total cholesterol (mg/dl) | Controls | |||
| Patients | ||||
| Triglyceride (mg/dl) | Controls | |||
| Patients | ||||
Mann–Whitney U test, pctl: percentile.
AT1 gene A1166C polymorphism genotypes according to gender in controls and patients
| AA ( | AC ( | Statistics | ||
|---|---|---|---|---|
| Controls | Women 35 | 29 (82.9) | 6 (17.1) | |
| Men 16 | 14 (87.5) | 2 (12.5) | ||
| Patients | Women 94 | 88 (93.6) | 6 (6.4) | |
| Men 112 | 106 (94.6) | 6 (5.4) | ||
Fisher's Exact Test.
Yates' Chi-Square.