Literature DB >> 23480664

ChemCalc: a building block for tomorrow's chemical infrastructure.

Luc Patiny1, Alain Borel.   

Abstract

Web services, as an aspect of cloud computing, are becoming an important part of the general IT infrastructure, and scientific computing is no exception to this trend. We propose a simple approach to develop chemical Web services, through which servers could expose the essential data manipulation functionality that students and researchers need for chemical calculations. These services return their results as JSON (JavaScript Object Notation) objects, which facilitates their use for Web applications. The ChemCalc project http://www.chemcalc.org demonstrates this approach: we present three Web services related with mass spectrometry, namely isotopic distribution simulation, peptide fragmentation simulation, and molecular formula determination. We also developed a complete Web application based on these three Web services, taking advantage of modern HTML5 and JavaScript libraries (ChemDoodle and jQuery).

Year:  2013        PMID: 23480664     DOI: 10.1021/ci300563h

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  60 in total

1.  Evaluating Nitrogen-Containing Biosynthetic Products Produced by Saltwater Culturing of Several California Littoral Zone Gram-Negative Bacteria.

Authors:  Nicholas Lorig-Roach; Patrick C Still; David Coppage; Jennifer E Compton; Mitchell S Crews; Gabriel Navarro; Karen Tenney; Phillip Crews
Journal:  J Nat Prod       Date:  2017-08-04       Impact factor: 4.050

2.  A Functional Group Approach for Prediction of APPI Response of Organic Synthetic Targets.

Authors:  Konstantin O Zhurov; Laure Menin; Thomas Di Franco; Yury O Tsybin
Journal:  J Am Soc Mass Spectrom       Date:  2015-04-21       Impact factor: 3.109

3.  Allosteric Effect of Adenosine Triphosphate on Peptide Recognition by 3'5'-Cyclic Adenosine Monophosphate Dependent Protein Kinase Catalytic Subunits.

Authors:  Rait Kivi; Karina Solovjova; Tõiv Haljasorg; Piret Arukuusk; Jaak Järv
Journal:  Protein J       Date:  2016-12       Impact factor: 2.371

4.  LBVS: an online platform for ligand-based virtual screening using publicly accessible databases.

Authors:  Minghao Zheng; Zhihong Liu; Xin Yan; Qianzhi Ding; Qiong Gu; Jun Xu
Journal:  Mol Divers       Date:  2014-09-03       Impact factor: 2.943

5.  Biolayer interferometry provides a robust method for detecting DNA binding small molecules in microbial extracts.

Authors:  Ross D Overacker; Birte Plitzko; Sandra Loesgen
Journal:  Anal Bioanal Chem       Date:  2020-11-25       Impact factor: 4.142

6.  Covalent Modification of Amino Acids and Peptides Induced by Ionizing Radiation from an Electron Beam Linear Accelerator Used in Radiotherapy.

Authors:  Benjamin B Minkoff; Steven T Bruckbauer; Grzegorz Sabat; Michael M Cox; Michael R Sussman
Journal:  Radiat Res       Date:  2019-03-08       Impact factor: 2.841

7.  Carrot solution culture bioproduction of uniformly labeled 13C-lutein and in vivo dosing in non-human primates.

Authors:  Joshua W Smith; Randy B Rogers; Sookyoung Jeon; Stanislav S Rubakhin; Lin Wang; Jonathan V Sweedler; Martha Neuringer; Matthew J Kuchan; John W Erdman
Journal:  Exp Biol Med (Maywood)       Date:  2016-10-23

8.  Alkali-Controlled C-H Cleavage or N-C Bond Formation by N2-Derived Iron Nitrides and Imides.

Authors:  K Cory MacLeod; Fabian S Menges; Sean F McWilliams; Stephanie M Craig; Brandon Q Mercado; Mark A Johnson; Patrick L Holland
Journal:  J Am Chem Soc       Date:  2016-08-29       Impact factor: 15.419

9.  Characterization of N-Succinylation of L-Lysylphosphatidylglycerol in Bacillus subtilis Using Tandem Mass Spectrometry.

Authors:  Metin Atila; George Katselis; Paulos Chumala; Yu Luo
Journal:  J Am Soc Mass Spectrom       Date:  2016-08-09       Impact factor: 3.109

10.  Saccharomyces cerevisiae Forms D-2-Hydroxyglutarate and Couples Its Degradation to D-Lactate Formation via a Cytosolic Transhydrogenase.

Authors:  Julia Becker-Kettern; Nicole Paczia; Jean-François Conrotte; Daniel P Kay; Cédric Guignard; Paul P Jung; Carole L Linster
Journal:  J Biol Chem       Date:  2016-01-16       Impact factor: 5.157

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