Literature DB >> 23476610

A diastereomer of methyl (1R,3'S)-1',1''-dimethyl-2,2''-dioxo-2H-dispiro-[ace-naphthyl-ene-1,2'-pyrrolidine-3',3''-indoline]-4'-carboxyl-ate.

Gnanavelu Ganesh1, Panneerselvam Yuvaraj, Piskala Subburaman Kannan, Boreddy Siva Rami Reddy, Arunachalathevar Subbiahpandi.   

Abstract

In the title compound, C26H22N2O4, the central pyrrolidine ring adopts a twist conformation and the cyclo-pentane ring of the dihydro-acenapthylene group adopts an envelope conformation with the spiro C atom as the flap. The naphthalene ring system of the dihydro-acenaphthyl-ene group forms dihedral angles of 83.4 (9) and 61.3 (7)°, respectively, with the mean planes of the pyrrolidine and indole rings. The crystal packing is stabilized by inter-molecular C-H⋯O hydrogen bonds. The title compound is a diastereomer of a previously reported structure.

Entities:  

Year:  2013        PMID: 23476610      PMCID: PMC3588527          DOI: 10.1107/S1600536813004868

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background literature and the previously reported diastereomer, see: Ganesh et al. (2013 ▶). For a related structure, see: Wei et al. (2012 ▶). For information on ring conformations, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C26H22N2O4 M = 426.46 Orthorhombic, a = 27.2997 (15) Å b = 9.7923 (6) Å c = 15.8557 (10) Å V = 4238.7 (4) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.25 × 0.22 × 0.19 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.978, T max = 0.983 23813 measured reflections 5039 independent reflections 3022 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.135 S = 1.02 5039 reflections 292 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT; data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813004868/bt6885sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004868/bt6885Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H22N2O4F(000) = 1792
Mr = 426.46Dx = 1.337 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 5039 reflections
a = 27.2997 (15) Åθ = 1.5–27.9°
b = 9.7923 (6) ŵ = 0.09 mm1
c = 15.8557 (10) ÅT = 293 K
V = 4238.7 (4) Å3Block, colourless
Z = 80.25 × 0.22 × 0.19 mm
Bruker APEXII CCD area-detector diffractometer5039 independent reflections
Radiation source: fine-focus sealed tube3022 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
ω and φ scansθmax = 27.9°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −35→31
Tmin = 0.978, Tmax = 0.983k = −12→11
23813 measured reflectionsl = −18→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0531P)2 + 1.3523P] where P = (Fo2 + 2Fc2)/3
5039 reflections(Δ/σ)max = 0.002
292 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.55248 (7)−0.08437 (18)0.02663 (15)0.0583 (6)
H1A0.5740−0.16070.03540.087*
H1B0.5527−0.0596−0.03200.087*
H1C0.5198−0.10880.04320.087*
C20.57113 (7)0.0054 (2)0.16787 (14)0.0543 (5)
H2A0.5784−0.08970.17940.065*
H2B0.54020.02850.19430.065*
C30.61210 (7)0.09760 (19)0.20075 (12)0.0463 (5)
H30.64120.04090.20980.056*
C40.62250 (6)0.19357 (17)0.12618 (11)0.0380 (4)
C50.61516 (6)0.09285 (16)0.05178 (12)0.0380 (4)
C60.65873 (6)−0.01367 (18)0.04464 (13)0.0454 (5)
C70.68374 (6)0.0100 (2)−0.03587 (13)0.0492 (5)
C80.72342 (7)−0.0500 (2)−0.07337 (16)0.0672 (6)
H80.7404−0.1202−0.04690.081*
C90.73756 (9)−0.0022 (3)−0.15287 (18)0.0842 (8)
H90.7652−0.0399−0.17810.101*
C100.71257 (9)0.0973 (3)−0.19492 (16)0.0778 (7)
H100.72340.1258−0.24770.093*
C110.67050 (8)0.1574 (2)−0.15918 (14)0.0573 (5)
C120.65758 (7)0.11197 (19)−0.07840 (12)0.0444 (4)
C130.61607 (6)0.15884 (17)−0.03457 (12)0.0401 (4)
C140.58614 (7)0.24994 (19)−0.07357 (13)0.0500 (5)
H140.55810.2818−0.04670.060*
C150.59812 (9)0.2955 (2)−0.15527 (14)0.0617 (6)
H150.57730.3571−0.18190.074*
C160.63878 (9)0.2529 (2)−0.19651 (14)0.0661 (6)
H160.64580.2872−0.24990.079*
C170.67325 (6)0.26047 (19)0.12476 (12)0.0413 (4)
C180.61710 (6)0.43187 (17)0.11591 (11)0.0368 (4)
C190.58897 (6)0.31498 (16)0.12240 (11)0.0359 (4)
C200.53874 (6)0.32524 (19)0.12696 (13)0.0479 (5)
H200.51930.24770.13220.058*
C210.51788 (7)0.4538 (2)0.12360 (16)0.0627 (6)
H210.48400.46270.12680.075*
C220.54625 (8)0.5680 (2)0.11568 (16)0.0644 (6)
H220.53130.65320.11320.077*
C230.59676 (7)0.55977 (19)0.11128 (13)0.0501 (5)
H230.61610.63740.10540.060*
C240.70630 (7)0.4956 (2)0.11344 (14)0.0560 (5)
H24A0.73700.44870.10840.084*
H24B0.70600.54810.16460.084*
H24C0.70200.55540.06600.084*
C250.60097 (8)0.1700 (2)0.28144 (14)0.0548 (5)
C260.63246 (11)0.3314 (3)0.37857 (16)0.0865 (8)
H26A0.59880.35580.38760.130*
H26B0.65200.41270.37560.130*
H26C0.64360.27550.42450.130*
N10.56904 (5)0.03024 (14)0.07673 (10)0.0434 (4)
N20.66700 (5)0.39740 (15)0.11545 (9)0.0403 (4)
O10.66576 (5)−0.10603 (14)0.09387 (10)0.0617 (4)
O20.71209 (5)0.20188 (14)0.12955 (10)0.0625 (4)
O30.56571 (6)0.1529 (2)0.32417 (11)0.0878 (6)
O40.63683 (6)0.25647 (16)0.30058 (10)0.0693 (4)
U11U22U33U12U13U23
C10.0490 (11)0.0381 (10)0.0879 (17)−0.0046 (9)−0.0040 (11)0.0022 (10)
C20.0531 (12)0.0480 (11)0.0617 (14)−0.0003 (10)0.0105 (10)0.0145 (10)
C30.0414 (10)0.0462 (10)0.0512 (12)0.0086 (8)0.0057 (9)0.0108 (9)
C40.0278 (8)0.0392 (9)0.0470 (11)0.0050 (7)0.0022 (7)0.0035 (8)
C50.0293 (8)0.0356 (8)0.0491 (11)0.0030 (7)0.0016 (8)0.0035 (8)
C60.0369 (9)0.0405 (10)0.0588 (12)0.0054 (8)−0.0038 (9)−0.0033 (9)
C70.0354 (9)0.0547 (11)0.0576 (13)0.0022 (9)−0.0015 (9)−0.0152 (10)
C80.0456 (12)0.0851 (16)0.0708 (16)0.0130 (11)0.0014 (11)−0.0249 (13)
C90.0501 (14)0.130 (2)0.0731 (18)0.0053 (16)0.0132 (13)−0.0356 (18)
C100.0615 (15)0.118 (2)0.0535 (15)−0.0135 (15)0.0146 (12)−0.0166 (15)
C110.0541 (12)0.0691 (14)0.0487 (13)−0.0160 (11)0.0033 (10)−0.0122 (11)
C120.0383 (10)0.0490 (10)0.0460 (11)−0.0077 (8)−0.0008 (8)−0.0098 (9)
C130.0346 (9)0.0391 (9)0.0465 (11)−0.0042 (7)−0.0007 (8)−0.0018 (8)
C140.0522 (11)0.0468 (10)0.0510 (12)0.0023 (9)−0.0042 (9)0.0033 (9)
C150.0739 (15)0.0565 (12)0.0546 (14)−0.0030 (11)−0.0114 (12)0.0076 (10)
C160.0824 (16)0.0717 (15)0.0443 (13)−0.0195 (14)−0.0002 (12)0.0046 (11)
C170.0298 (9)0.0503 (10)0.0439 (11)0.0042 (8)0.0005 (8)−0.0039 (8)
C180.0312 (9)0.0406 (9)0.0388 (10)0.0001 (7)−0.0009 (7)0.0022 (7)
C190.0302 (8)0.0364 (9)0.0410 (10)0.0028 (7)0.0035 (7)0.0027 (7)
C200.0287 (9)0.0435 (10)0.0716 (14)0.0002 (8)0.0057 (9)0.0043 (9)
C210.0327 (10)0.0522 (12)0.1033 (19)0.0103 (9)0.0043 (11)0.0031 (12)
C220.0507 (12)0.0411 (11)0.1013 (19)0.0123 (10)−0.0040 (12)0.0057 (11)
C230.0472 (11)0.0385 (10)0.0646 (14)−0.0027 (8)−0.0034 (10)0.0049 (9)
C240.0359 (10)0.0637 (12)0.0684 (15)−0.0142 (9)0.0005 (10)−0.0036 (11)
C250.0512 (12)0.0612 (13)0.0522 (13)0.0139 (10)0.0039 (10)0.0137 (10)
C260.113 (2)0.0783 (17)0.0680 (17)0.0095 (16)0.0000 (16)−0.0145 (14)
N10.0343 (8)0.0364 (8)0.0595 (10)−0.0005 (6)0.0051 (7)0.0061 (7)
N20.0283 (7)0.0451 (8)0.0474 (9)−0.0041 (6)−0.0004 (6)0.0007 (7)
O10.0559 (9)0.0494 (8)0.0797 (11)0.0188 (7)0.0000 (8)0.0083 (8)
O20.0301 (7)0.0664 (9)0.0908 (12)0.0120 (6)−0.0030 (7)−0.0080 (8)
O30.0700 (11)0.1265 (15)0.0668 (11)0.0017 (10)0.0238 (9)−0.0047 (11)
O40.0766 (11)0.0749 (10)0.0566 (10)−0.0028 (9)0.0069 (8)−0.0051 (8)
C1—N11.447 (2)C13—C141.359 (2)
C1—H1A0.9600C14—C151.408 (3)
C1—H1B0.9600C14—H140.9300
C1—H1C0.9600C15—C161.354 (3)
C2—N11.467 (3)C15—H150.9300
C2—C31.529 (3)C16—H160.9300
C2—H2A0.9700C17—O21.208 (2)
C2—H2B0.9700C17—N21.360 (2)
C3—C251.494 (3)C18—C231.372 (2)
C3—C41.537 (2)C18—C191.382 (2)
C3—H30.9800C18—N21.403 (2)
C4—C191.502 (2)C19—C201.377 (2)
C4—C171.533 (2)C20—C211.383 (3)
C4—C51.551 (2)C20—H200.9300
C5—N11.455 (2)C21—C221.366 (3)
C5—C131.514 (2)C21—H210.9300
C5—C61.586 (2)C22—C231.383 (3)
C6—O11.210 (2)C22—H220.9300
C6—C71.466 (3)C23—H230.9300
C7—C81.368 (3)C24—N21.441 (2)
C7—C121.401 (3)C24—H24A0.9600
C8—C91.399 (4)C24—H24B0.9600
C8—H80.9300C24—H24C0.9600
C9—C101.364 (4)C25—O31.189 (2)
C9—H90.9300C25—O41.330 (3)
C10—C111.410 (3)C26—O41.443 (3)
C10—H100.9300C26—H26A0.9600
C11—C121.401 (3)C26—H26B0.9600
C11—C161.406 (3)C26—H26C0.9600
C12—C131.406 (2)
N1—C1—H1A109.5C12—C13—C5108.70 (15)
N1—C1—H1B109.5C13—C14—C15119.1 (2)
H1A—C1—H1B109.5C13—C14—H14120.4
N1—C1—H1C109.5C15—C14—H14120.4
H1A—C1—H1C109.5C16—C15—C14122.5 (2)
H1B—C1—H1C109.5C16—C15—H15118.8
N1—C2—C3105.47 (15)C14—C15—H15118.8
N1—C2—H2A110.6C15—C16—C11120.4 (2)
C3—C2—H2A110.6C15—C16—H16119.8
N1—C2—H2B110.6C11—C16—H16119.8
C3—C2—H2B110.6O2—C17—N2125.81 (17)
H2A—C2—H2B108.8O2—C17—C4126.13 (17)
C25—C3—C2115.06 (17)N2—C17—C4108.05 (14)
C25—C3—C4113.98 (16)C23—C18—C19122.33 (16)
C2—C3—C4103.53 (15)C23—C18—N2127.75 (16)
C25—C3—H3108.0C19—C18—N2109.91 (14)
C2—C3—H3108.0C20—C19—C18119.80 (15)
C4—C3—H3108.0C20—C19—C4131.52 (15)
C19—C4—C17102.25 (13)C18—C19—C4108.64 (14)
C19—C4—C3113.70 (14)C19—C20—C21118.33 (17)
C17—C4—C3116.09 (15)C19—C20—H20120.8
C19—C4—C5113.23 (14)C21—C20—H20120.8
C17—C4—C5112.19 (14)C22—C21—C20121.03 (18)
C3—C4—C599.93 (13)C22—C21—H21119.5
N1—C5—C13116.08 (14)C20—C21—H21119.5
N1—C5—C499.96 (13)C21—C22—C23121.47 (18)
C13—C5—C4114.48 (13)C21—C22—H22119.3
N1—C5—C6113.03 (13)C23—C22—H22119.3
C13—C5—C6101.76 (14)C18—C23—C22117.02 (18)
C4—C5—C6112.06 (14)C18—C23—H23121.5
O1—C6—C7127.30 (17)C22—C23—H23121.5
O1—C6—C5124.36 (17)N2—C24—H24A109.5
C7—C6—C5107.91 (15)N2—C24—H24B109.5
C8—C7—C12120.0 (2)H24A—C24—H24B109.5
C8—C7—C6132.8 (2)N2—C24—H24C109.5
C12—C7—C6107.11 (16)H24A—C24—H24C109.5
C7—C8—C9117.8 (2)H24B—C24—H24C109.5
C7—C8—H8121.1O3—C25—O4123.7 (2)
C9—C8—H8121.1O3—C25—C3125.9 (2)
C10—C9—C8122.8 (2)O4—C25—C3110.38 (17)
C10—C9—H9118.6O4—C26—H26A109.5
C8—C9—H9118.6O4—C26—H26B109.5
C9—C10—C11120.6 (2)H26A—C26—H26B109.5
C9—C10—H10119.7O4—C26—H26C109.5
C11—C10—H10119.7H26A—C26—H26C109.5
C12—C11—C16116.18 (19)H26B—C26—H26C109.5
C12—C11—C10116.1 (2)C1—N1—C5116.59 (15)
C16—C11—C10127.6 (2)C1—N1—C2115.12 (15)
C7—C12—C11122.55 (18)C5—N1—C2107.69 (14)
C7—C12—C13113.93 (18)C17—N2—C18111.00 (14)
C11—C12—C13123.44 (19)C17—N2—C24124.54 (15)
C14—C13—C12118.29 (18)C18—N2—C24124.22 (15)
C14—C13—C5133.00 (17)C25—O4—C26117.31 (19)
N1—C2—C3—C25137.57 (16)C12—C13—C14—C15−1.0 (3)
N1—C2—C3—C412.55 (18)C5—C13—C14—C15178.08 (18)
C25—C3—C4—C19−41.3 (2)C13—C14—C15—C16−0.7 (3)
C2—C3—C4—C1984.45 (18)C14—C15—C16—C111.5 (3)
C25—C3—C4—C1777.0 (2)C12—C11—C16—C15−0.6 (3)
C2—C3—C4—C17−157.33 (15)C10—C11—C16—C15176.3 (2)
C25—C3—C4—C5−162.21 (15)C19—C4—C17—O2177.45 (19)
C2—C3—C4—C5−36.50 (16)C3—C4—C17—O253.1 (3)
C19—C4—C5—N1−73.87 (16)C5—C4—C17—O2−60.9 (2)
C17—C4—C5—N1171.02 (13)C19—C4—C17—N2−3.77 (19)
C3—C4—C5—N147.41 (14)C3—C4—C17—N2−128.12 (16)
C19—C4—C5—C1350.91 (19)C5—C4—C17—N2117.86 (16)
C17—C4—C5—C13−64.20 (18)C23—C18—C19—C20−2.0 (3)
C3—C4—C5—C13172.20 (14)N2—C18—C19—C20177.74 (17)
C19—C4—C5—C6166.14 (14)C23—C18—C19—C4−179.96 (17)
C17—C4—C5—C651.03 (19)N2—C18—C19—C4−0.3 (2)
C3—C4—C5—C6−72.58 (16)C17—C4—C19—C20−175.3 (2)
N1—C5—C6—O1−40.9 (3)C3—C4—C19—C20−49.4 (3)
C13—C5—C6—O1−166.14 (18)C5—C4—C19—C2063.8 (3)
C4—C5—C6—O171.1 (2)C17—C4—C19—C182.39 (18)
N1—C5—C6—C7131.98 (16)C3—C4—C19—C18128.31 (16)
C13—C5—C6—C76.77 (17)C5—C4—C19—C18−118.52 (16)
C4—C5—C6—C7−115.98 (16)C18—C19—C20—C210.9 (3)
O1—C6—C7—C8−8.3 (4)C4—C19—C20—C21178.4 (2)
C5—C6—C7—C8179.0 (2)C19—C20—C21—C220.2 (3)
O1—C6—C7—C12168.86 (19)C20—C21—C22—C23−0.4 (4)
C5—C6—C7—C12−3.79 (19)C19—C18—C23—C221.7 (3)
C12—C7—C8—C92.4 (3)N2—C18—C23—C22−177.93 (19)
C6—C7—C8—C9179.3 (2)C21—C22—C23—C18−0.5 (3)
C7—C8—C9—C10−2.3 (4)C2—C3—C25—O36.7 (3)
C8—C9—C10—C110.0 (4)C4—C3—C25—O3126.1 (2)
C9—C10—C11—C122.0 (3)C2—C3—C25—O4−174.36 (16)
C9—C10—C11—C16−174.9 (2)C4—C3—C25—O4−55.0 (2)
C8—C7—C12—C11−0.4 (3)C13—C5—N1—C163.6 (2)
C6—C7—C12—C11−178.03 (17)C4—C5—N1—C1−172.74 (14)
C8—C7—C12—C13176.48 (17)C6—C5—N1—C1−53.5 (2)
C6—C7—C12—C13−1.1 (2)C13—C5—N1—C2−165.25 (15)
C16—C11—C12—C7175.42 (18)C4—C5—N1—C2−41.59 (16)
C10—C11—C12—C7−1.8 (3)C6—C5—N1—C277.70 (18)
C16—C11—C12—C13−1.2 (3)C3—C2—N1—C1150.60 (15)
C10—C11—C12—C13−178.42 (18)C3—C2—N1—C518.64 (18)
C7—C12—C13—C14−174.87 (16)O2—C17—N2—C18−177.33 (18)
C11—C12—C13—C142.0 (3)C4—C17—N2—C183.9 (2)
C7—C12—C13—C55.8 (2)O2—C17—N2—C24−2.8 (3)
C11—C12—C13—C5−177.31 (16)C4—C17—N2—C24178.40 (16)
N1—C5—C13—C1450.3 (3)C23—C18—N2—C17177.32 (19)
C4—C5—C13—C14−65.5 (2)C19—C18—N2—C17−2.4 (2)
C6—C5—C13—C14173.43 (19)C23—C18—N2—C242.8 (3)
N1—C5—C13—C12−130.55 (15)C19—C18—N2—C24−176.90 (17)
C4—C5—C13—C12113.69 (15)O3—C25—O4—C261.0 (3)
C6—C5—C13—C12−7.40 (17)C3—C25—O4—C26−177.94 (18)
D—H···AD—HH···AD···AD—H···A
C1—H1B···O3i0.962.483.299 (3)143
C20—H20···O3ii0.932.593.403 (3)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1B⋯O3i 0.962.483.299 (3)143
C20—H20⋯O3ii 0.932.593.403 (3)146

Symmetry codes: (i) ; (ii) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Ang Chee Wei; Mohamed Ashraf Ali; Tan Soo Choon; Suhana Arshad; Ibrahim Abdul Razak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-13

3.  rac-Methyl (1R,3'S)-1',1''-dimethyl-2,2''-dioxo-2H-dispiro-[acenaphthyl-ene-1,2'-pyrrolidine-3',3''-indoline]-4'-carboxyl-ate.

Authors:  G Ganesh; Panneer Selvam Yuvaraj; Chinthalapuri Divakara; Boreddy S R Reddy; A Subbiahpandi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-12

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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