Literature DB >> 23424514

rac-Methyl (1R,3'S)-1',1''-dimethyl-2,2''-dioxo-2H-dispiro-[acenaphthyl-ene-1,2'-pyrrolidine-3',3''-indoline]-4'-carboxyl-ate.

G Ganesh1, Panneer Selvam Yuvaraj, Chinthalapuri Divakara, Boreddy S R Reddy, A Subbiahpandi.   

Abstract

In the title compound, C(26)H(22)N(2)O(4), the pyrrolidine ring adopts a twisted conformation and the other five-membered rings adopt envelope conformations with the spiro C atoms as the flap atoms. The naphthalene ring system of the dihydro-acenaphthyl-ene group forms dihedral angles of 89.2 (9) and 75.5 (6)° with the pyrrolidine and indole rings, respectively. The pyrrolidine ring makes a dihedral angle of 80.1 (9)° with the indole ring. In the crystal, mol-ecules are linked by weak C-H⋯O hydrogen bonds, forming chains along the b-axis direction.

Entities:  

Year:  2013        PMID: 23424514      PMCID: PMC3569768          DOI: 10.1107/S1600536813000470

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of naphthalene derivatives, see: Wiltz et al. (1998 ▶); Wright et al. (2000 ▶); Varma et al. (1994 ▶). For a related structure, see: Wei et al. (2012 ▶). For ring conformations, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C26H22N2O4 M = 426.46 Monoclinic, a = 15.4839 (4) Å b = 9.5832 (2) Å c = 15.6375 (4) Å β = 115.184 (1)° V = 2099.81 (9) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.25 × 0.22 × 0.19 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.977, T max = 0.983 19264 measured reflections 4057 independent reflections 3017 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.103 S = 1.03 4057 reflections 292 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813000470/lx2278sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813000470/lx2278Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H22N2O4F(000) = 896
Mr = 426.46Dx = 1.349 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4057 reflections
a = 15.4839 (4) Åθ = 1.5–25.8°
b = 9.5832 (2) ŵ = 0.09 mm1
c = 15.6375 (4) ÅT = 293 K
β = 115.184 (1)°Block, colourless
V = 2099.81 (9) Å30.25 × 0.22 × 0.19 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer4057 independent reflections
Radiation source: fine-focus sealed tube3017 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
ω and φ scansθmax = 25.8°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −18→18
Tmin = 0.977, Tmax = 0.983k = −11→11
19264 measured reflectionsl = −19→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: difference Fourier map
wR(F2) = 0.103H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0432P)2 + 0.5222P] where P = (Fo2 + 2Fc2)/3
4057 reflections(Δ/σ)max < 0.001
292 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.69067 (8)0.37535 (12)0.28269 (9)0.0565 (3)
O20.87808 (9)0.87118 (12)0.39458 (9)0.0552 (3)
O30.64333 (11)0.58931 (15)0.48841 (11)0.0762 (4)
O40.65285 (10)0.81185 (13)0.45236 (10)0.0648 (4)
N10.87057 (9)0.51097 (14)0.41944 (9)0.0456 (3)
N20.73670 (10)0.90053 (13)0.26438 (10)0.0490 (3)
C10.91612 (13)0.37648 (19)0.42302 (14)0.0590 (5)
H1A0.86830.30500.39990.088*
H1B0.95960.35600.48710.088*
H1C0.95050.38000.38440.088*
C20.81537 (13)0.51929 (18)0.47465 (12)0.0537 (4)
H2A0.85620.51230.54180.064*
H2B0.76730.44650.45680.064*
C30.77008 (12)0.66228 (17)0.44928 (11)0.0468 (4)
H30.81740.73030.48900.056*
C40.75428 (11)0.68832 (15)0.34492 (11)0.0385 (3)
C50.81077 (10)0.56359 (15)0.32472 (10)0.0377 (3)
C60.74144 (11)0.44844 (15)0.25997 (12)0.0410 (4)
C70.75797 (10)0.43438 (15)0.17441 (11)0.0399 (4)
C80.71903 (12)0.34921 (17)0.09679 (12)0.0503 (4)
H80.66770.29130.08780.060*
C90.75897 (13)0.35191 (18)0.03135 (12)0.0566 (5)
H90.73210.2965−0.02250.068*
C100.83614 (14)0.43324 (18)0.04395 (12)0.0544 (4)
H100.86130.4304−0.00040.065*
C110.87793 (12)0.52114 (16)0.12320 (11)0.0437 (4)
C120.83529 (10)0.52056 (15)0.18635 (10)0.0375 (3)
C130.86999 (10)0.59774 (15)0.27095 (11)0.0377 (3)
C140.95079 (11)0.67546 (17)0.29344 (12)0.0470 (4)
H140.97690.72550.34970.056*
C150.99391 (13)0.67866 (19)0.23017 (13)0.0550 (5)
H151.04820.73310.24540.066*
C160.95951 (13)0.60548 (19)0.14783 (13)0.0545 (4)
H160.98980.61110.10780.065*
C170.79970 (12)0.82915 (16)0.33990 (12)0.0430 (4)
C180.65287 (11)0.70826 (15)0.27105 (11)0.0394 (4)
C190.64718 (11)0.83487 (16)0.22577 (11)0.0429 (4)
C200.56296 (13)0.88569 (19)0.15782 (13)0.0555 (5)
H200.56090.97010.12760.067*
C210.48165 (13)0.8071 (2)0.13602 (14)0.0601 (5)
H210.42370.83900.09020.072*
C220.48497 (12)0.6824 (2)0.18089 (14)0.0584 (5)
H220.42920.63170.16570.070*
C230.57069 (11)0.63162 (17)0.24860 (12)0.0489 (4)
H230.57270.54700.27850.059*
C240.75568 (16)1.03779 (19)0.23647 (17)0.0747 (6)
H24A0.71891.10660.25110.112*
H24B0.73831.03850.16980.112*
H24C0.82241.05890.27010.112*
C250.68278 (13)0.68033 (18)0.46619 (12)0.0511 (4)
C260.56590 (17)0.8428 (3)0.4604 (2)0.0891 (8)
H26A0.51440.79060.41390.134*
H26B0.55250.94080.45030.134*
H26C0.57270.81780.52240.134*
U11U22U33U12U13U23
O10.0570 (7)0.0447 (7)0.0803 (9)−0.0125 (6)0.0413 (7)−0.0052 (6)
O20.0555 (7)0.0507 (7)0.0624 (8)−0.0152 (6)0.0281 (6)−0.0144 (6)
O30.0945 (10)0.0629 (8)0.1036 (11)−0.0088 (8)0.0734 (10)0.0024 (8)
O40.0775 (9)0.0521 (7)0.0881 (10)0.0029 (6)0.0577 (8)−0.0005 (7)
N10.0475 (8)0.0464 (8)0.0437 (8)0.0061 (6)0.0202 (6)0.0065 (6)
N20.0579 (9)0.0333 (7)0.0603 (9)−0.0026 (6)0.0295 (7)0.0028 (6)
C10.0604 (11)0.0532 (11)0.0598 (11)0.0149 (9)0.0223 (9)0.0104 (9)
C20.0652 (11)0.0552 (10)0.0481 (10)0.0046 (9)0.0313 (9)0.0099 (8)
C30.0543 (10)0.0472 (9)0.0452 (9)−0.0055 (8)0.0272 (8)−0.0025 (7)
C40.0422 (8)0.0358 (8)0.0422 (8)−0.0021 (6)0.0225 (7)−0.0013 (7)
C50.0387 (8)0.0352 (8)0.0410 (8)−0.0005 (6)0.0188 (7)0.0005 (6)
C60.0364 (8)0.0335 (8)0.0546 (10)0.0022 (6)0.0207 (7)0.0012 (7)
C70.0392 (8)0.0320 (8)0.0448 (9)0.0037 (6)0.0144 (7)0.0016 (7)
C80.0502 (10)0.0387 (9)0.0521 (10)−0.0008 (7)0.0121 (8)−0.0043 (8)
C90.0714 (12)0.0467 (10)0.0434 (10)0.0045 (9)0.0164 (9)−0.0074 (8)
C100.0735 (12)0.0481 (10)0.0468 (10)0.0071 (9)0.0308 (9)0.0015 (8)
C110.0523 (10)0.0399 (8)0.0421 (9)0.0067 (7)0.0231 (8)0.0047 (7)
C120.0379 (8)0.0331 (7)0.0397 (8)0.0048 (6)0.0148 (7)0.0037 (6)
C130.0362 (8)0.0369 (8)0.0411 (8)0.0011 (6)0.0176 (7)0.0010 (7)
C140.0439 (9)0.0511 (9)0.0485 (9)−0.0084 (7)0.0219 (8)−0.0058 (8)
C150.0484 (10)0.0592 (11)0.0664 (12)−0.0132 (8)0.0332 (9)−0.0058 (9)
C160.0595 (11)0.0573 (11)0.0617 (11)−0.0001 (9)0.0402 (10)0.0039 (9)
C170.0493 (9)0.0376 (8)0.0502 (9)−0.0058 (7)0.0290 (8)−0.0091 (7)
C180.0411 (8)0.0375 (8)0.0454 (9)0.0009 (6)0.0241 (7)−0.0023 (7)
C190.0502 (9)0.0367 (8)0.0483 (9)0.0029 (7)0.0273 (8)−0.0026 (7)
C200.0653 (12)0.0455 (10)0.0572 (11)0.0148 (9)0.0274 (10)0.0066 (8)
C210.0496 (10)0.0622 (12)0.0623 (12)0.0147 (9)0.0177 (9)−0.0045 (10)
C220.0416 (10)0.0616 (11)0.0709 (12)0.0012 (8)0.0230 (9)−0.0092 (10)
C230.0457 (9)0.0454 (9)0.0608 (11)−0.0004 (7)0.0277 (8)−0.0006 (8)
C240.0924 (16)0.0405 (10)0.0951 (16)−0.0103 (10)0.0438 (13)0.0119 (10)
C250.0649 (11)0.0489 (10)0.0522 (10)−0.0087 (8)0.0371 (9)−0.0056 (8)
C260.0934 (17)0.0816 (16)0.127 (2)0.0184 (13)0.0803 (17)0.0055 (14)
O1—C61.2135 (18)C9—C101.369 (3)
O2—C171.2178 (19)C9—H90.9300
O3—C251.198 (2)C10—C111.408 (2)
O4—C251.328 (2)C10—H100.9300
O4—C261.436 (2)C11—C121.402 (2)
N1—C21.453 (2)C11—C161.408 (2)
N1—C11.459 (2)C12—C131.407 (2)
N1—C51.4622 (19)C13—C141.367 (2)
N2—C171.354 (2)C14—C151.410 (2)
N2—C191.403 (2)C14—H140.9300
N2—C241.455 (2)C15—C161.360 (3)
C1—H1A0.9600C15—H150.9300
C1—H1B0.9600C16—H160.9300
C1—H1C0.9600C18—C231.379 (2)
C2—C31.513 (2)C18—C191.389 (2)
C2—H2A0.9700C19—C201.374 (2)
C2—H2B0.9700C20—C211.379 (3)
C3—C251.494 (2)C20—H200.9300
C3—C41.564 (2)C21—C221.376 (3)
C3—H30.9800C21—H210.9300
C4—C181.514 (2)C22—C231.387 (2)
C4—C171.539 (2)C22—H220.9300
C4—C51.590 (2)C23—H230.9300
C5—C131.520 (2)C24—H24A0.9600
C5—C61.572 (2)C24—H24B0.9600
C6—C71.471 (2)C24—H24C0.9600
C7—C81.371 (2)C26—H26A0.9600
C7—C121.400 (2)C26—H26B0.9600
C8—C91.403 (2)C26—H26C0.9600
C8—H80.9300
C25—O4—C26117.20 (15)C12—C11—C16116.49 (15)
C2—N1—C1115.01 (14)C10—C11—C16127.37 (16)
C2—N1—C5107.70 (12)C7—C12—C11122.73 (14)
C1—N1—C5115.53 (13)C7—C12—C13113.46 (13)
C17—N2—C19111.21 (13)C11—C12—C13123.65 (14)
C17—N2—C24123.77 (15)C14—C13—C12118.01 (14)
C19—N2—C24124.40 (15)C14—C13—C5132.55 (14)
N1—C1—H1A109.5C12—C13—C5109.14 (12)
N1—C1—H1B109.5C13—C14—C15119.08 (15)
H1A—C1—H1B109.5C13—C14—H14120.5
N1—C1—H1C109.5C15—C14—H14120.5
H1A—C1—H1C109.5C16—C15—C14122.79 (16)
H1B—C1—H1C109.5C16—C15—H15118.6
N1—C2—C3102.59 (13)C14—C15—H15118.6
N1—C2—H2A111.2C15—C16—C11119.94 (15)
C3—C2—H2A111.2C15—C16—H16120.0
N1—C2—H2B111.2C11—C16—H16120.0
C3—C2—H2B111.2O2—C17—N2125.31 (15)
H2A—C2—H2B109.2O2—C17—C4126.49 (15)
C25—C3—C2114.31 (14)N2—C17—C4108.19 (13)
C25—C3—C4114.51 (14)C23—C18—C19118.95 (15)
C2—C3—C4105.51 (13)C23—C18—C4132.22 (14)
C25—C3—H3107.4C19—C18—C4108.63 (13)
C2—C3—H3107.4C20—C19—C18122.52 (16)
C4—C3—H3107.4C20—C19—N2127.77 (16)
C18—C4—C17101.45 (12)C18—C19—N2109.61 (14)
C18—C4—C3117.85 (12)C19—C20—C21117.63 (17)
C17—C4—C3108.74 (12)C19—C20—H20121.2
C18—C4—C5115.01 (12)C21—C20—H20121.2
C17—C4—C5110.31 (12)C22—C21—C20121.07 (17)
C3—C4—C5103.43 (12)C22—C21—H21119.5
N1—C5—C13111.32 (12)C20—C21—H21119.5
N1—C5—C6112.02 (12)C21—C22—C23120.68 (17)
C13—C5—C6101.67 (12)C21—C22—H22119.7
N1—C5—C4102.87 (11)C23—C22—H22119.7
C13—C5—C4117.40 (12)C18—C23—C22119.14 (16)
C6—C5—C4111.90 (11)C18—C23—H23120.4
O1—C6—C7126.75 (15)C22—C23—H23120.4
O1—C6—C5124.52 (14)N2—C24—H24A109.5
C7—C6—C5108.34 (12)N2—C24—H24B109.5
C8—C7—C12119.87 (15)H24A—C24—H24B109.5
C8—C7—C6132.72 (15)N2—C24—H24C109.5
C12—C7—C6107.13 (13)H24A—C24—H24C109.5
C7—C8—C9118.06 (16)H24B—C24—H24C109.5
C7—C8—H8121.0O3—C25—O4123.53 (17)
C9—C8—H8121.0O3—C25—C3125.34 (17)
C10—C9—C8122.29 (16)O4—C25—C3111.12 (14)
C10—C9—H9118.9O4—C26—H26A109.5
C8—C9—H9118.9O4—C26—H26B109.5
C9—C10—C11120.90 (16)H26A—C26—H26B109.5
C9—C10—H10119.5O4—C26—H26C109.5
C11—C10—H10119.5H26A—C26—H26C109.5
C12—C11—C10116.09 (15)H26B—C26—H26C109.5
C1—N1—C2—C3−174.54 (14)C7—C12—C13—C5−0.36 (17)
C5—N1—C2—C3−44.14 (16)C11—C12—C13—C5−175.79 (13)
N1—C2—C3—C25158.48 (14)N1—C5—C13—C14−50.7 (2)
N1—C2—C3—C431.78 (17)C6—C5—C13—C14−170.18 (17)
C25—C3—C4—C18−8.3 (2)C4—C5—C13—C1467.4 (2)
C2—C3—C4—C18118.29 (15)N1—C5—C13—C12122.71 (13)
C25—C3—C4—C17106.29 (16)C6—C5—C13—C123.27 (15)
C2—C3—C4—C17−127.12 (14)C4—C5—C13—C12−119.15 (14)
C25—C3—C4—C5−136.46 (14)C12—C13—C14—C152.0 (2)
C2—C3—C4—C5−9.87 (16)C5—C13—C14—C15174.98 (16)
C2—N1—C5—C13163.81 (13)C13—C14—C15—C16−1.2 (3)
C1—N1—C5—C13−66.09 (17)C14—C15—C16—C11−0.5 (3)
C2—N1—C5—C6−83.11 (15)C12—C11—C16—C151.3 (2)
C1—N1—C5—C647.00 (18)C10—C11—C16—C15−176.25 (17)
C2—N1—C5—C437.23 (15)C19—N2—C17—O2−169.50 (15)
C1—N1—C5—C4167.34 (13)C24—N2—C17—O21.8 (3)
C18—C4—C5—N1−145.28 (12)C19—N2—C17—C49.62 (17)
C17—C4—C5—N1100.76 (14)C24—N2—C17—C4−179.04 (16)
C3—C4—C5—N1−15.38 (14)C18—C4—C17—O2169.98 (15)
C18—C4—C5—C1392.14 (15)C3—C4—C17—O245.1 (2)
C17—C4—C5—C13−21.82 (18)C5—C4—C17—O2−67.68 (19)
C3—C4—C5—C13−137.96 (13)C18—C4—C17—N2−9.13 (15)
C18—C4—C5—C6−24.86 (17)C3—C4—C17—N2−134.01 (13)
C17—C4—C5—C6−138.82 (13)C5—C4—C17—N2113.21 (14)
C3—C4—C5—C6105.04 (14)C17—C4—C18—C23−169.12 (16)
N1—C5—C6—O149.29 (19)C3—C4—C18—C23−50.6 (2)
C13—C5—C6—O1168.23 (14)C5—C4—C18—C2371.8 (2)
C4—C5—C6—O1−65.65 (19)C17—C4—C18—C195.61 (15)
N1—C5—C6—C7−123.94 (13)C3—C4—C18—C19124.14 (14)
C13—C5—C6—C7−5.00 (15)C5—C4—C18—C19−113.43 (14)
C4—C5—C6—C7121.13 (13)C23—C18—C19—C20−1.4 (2)
O1—C6—C7—C85.6 (3)C4—C18—C19—C20−176.94 (15)
C5—C6—C7—C8178.65 (16)C23—C18—C19—N2175.13 (14)
O1—C6—C7—C12−168.02 (15)C4—C18—C19—N2−0.41 (17)
C5—C6—C7—C125.01 (16)C17—N2—C19—C20170.31 (16)
C12—C7—C8—C90.0 (2)C24—N2—C19—C20−1.0 (3)
C6—C7—C8—C9−172.97 (16)C17—N2—C19—C18−5.99 (18)
C7—C8—C9—C101.7 (3)C24—N2—C19—C18−177.26 (16)
C8—C9—C10—C11−1.4 (3)C18—C19—C20—C211.0 (2)
C9—C10—C11—C12−0.6 (2)N2—C19—C20—C21−174.81 (16)
C9—C10—C11—C16176.92 (17)C19—C20—C21—C220.1 (3)
C8—C7—C12—C11−2.1 (2)C20—C21—C22—C23−0.8 (3)
C6—C7—C12—C11172.48 (13)C19—C18—C23—C220.6 (2)
C8—C7—C12—C13−177.61 (13)C4—C18—C23—C22174.91 (16)
C6—C7—C12—C13−3.00 (17)C21—C22—C23—C180.4 (3)
C10—C11—C12—C72.4 (2)C26—O4—C25—O3−3.1 (3)
C16—C11—C12—C7−175.42 (14)C26—O4—C25—C3176.22 (17)
C10—C11—C12—C13177.41 (14)C2—C3—C25—O3−7.5 (3)
C16—C11—C12—C13−0.4 (2)C4—C3—C25—O3114.4 (2)
C7—C12—C13—C14174.18 (14)C2—C3—C25—O4173.17 (15)
C11—C12—C13—C14−1.3 (2)C4—C3—C25—O4−64.93 (19)
D—H···AD—HH···AD···AD—H···A
C10—H10···O2i0.932.603.268 (2)130
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C10—H10⋯O2i 0.932.603.268 (2)130

Symmetry code: (i) .

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Authors:  George M Sheldrick
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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  A diastereomer of methyl (1R,3'S)-1',1''-dimethyl-2,2''-dioxo-2H-dispiro-[ace-naphthyl-ene-1,2'-pyrrolidine-3',3''-indoline]-4'-carboxyl-ate.

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