Literature DB >> 23476581

N,N-Diethyl-anilinium 5-(5-chloro-2,4-dinitro-phen-yl)-2,6-dioxo-1,2,3,6-tetra-hydro-pyrimidin-4-olate.

R Babykala1, D Kalaivani.   

Abstract

In the anion of the title salt, C10H16N(+)·C10H4ClN4O7(-) [trivial name = N,N-diethyl-anilinium 5-(3-chloro-4,6,-dinitro-phen-yl)barbiturate], the dihedral angle between the benzene and pyrimidine rings is 45.49 (6)°. The mean plane of the nitro group, which is ortho-substituted with respect to the pyrimidine ring, is twisted by 41.57 (13)° from the benzene ring, while the mean plane of the nitro group, which is para-substituted, is twisted by 14.41 (12)° from this ring. In the crystal, N-H⋯O hydrogen bonds link cations and anions into chains along [1-10]. Within the chains, inversion-related anionic barbiturate anions form R2(2)(8) ring motifs.

Entities:  

Year:  2013        PMID: 23476581      PMCID: PMC3588430          DOI: 10.1107/S1600536813004352

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For different types of inter­actions between electron-deficient nitro aromatics and bases, see: Jackson & Gazzolo (1900 ▶); Mulliken (1952 ▶); Russell & Janzen (1962 ▶); Blake et al. (1966 ▶). For donor–acceptor inter­actions see: Mulliken (1952 ▶); Radha et al. (1987 ▶). For π–π stacking inter­actions, see: Vembu & Fronczek (2009 ▶). For the biological activity of pyrimidine and barbiturate derivatives, see: Jain et al. (2006 ▶); Tripathi (2009 ▶) and of related barbiturates, see: Kalaivani & Buvaneswari (2010 ▶). For the crystal structures of related barbiturates, see: Kalaivani & Malarvizhi (2009 ▶); Buvaneswari & Kalaivani (2011 ▶); Kalaivani & Mangaiyarkarasi (2013 ▶). For hydrogen-bond graph-set motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C10H16NC10H4ClN4O7 M = 477.86 Triclinic, a = 9.8040 (2) Å b = 10.2870 (2) Å c = 11.8260 (2) Å α = 74.727 (1)° β = 82.761 (1)° γ = 71.817 (1)° V = 1091.87 (4) Å3 Z = 2 Mo Kα radiation μ = 0.23 mm−1 T = 293 K 0.30 × 0.30 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004) ▶ T min = 0.913, T max = 0.985 18678 measured reflections 3836 independent reflections 3123 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.117 S = 1.04 3836 reflections 312 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813004352/lh5583sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004352/lh5583Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813004352/lh5583Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H16N+·C10H4ClN4O7Z = 2
Mr = 477.86F(000) = 496
Triclinic, P1Dx = 1.453 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.8040 (2) ÅCell parameters from 7243 reflections
b = 10.2870 (2) Åθ = 2.2–27.2°
c = 11.8260 (2) ŵ = 0.23 mm1
α = 74.727 (1)°T = 293 K
β = 82.761 (1)°Block, red
γ = 71.817 (1)°0.30 × 0.30 × 0.20 mm
V = 1091.87 (4) Å3
Bruker Kappa APEXII CCD diffractometer3836 independent reflections
Radiation source: fine-focus sealed tube3123 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
ω and φ scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −11→11
Tmin = 0.913, Tmax = 0.985k = −12→12
18678 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0503P)2 + 0.5116P] where P = (Fo2 + 2Fc2)/3
3836 reflections(Δ/σ)max < 0.001
312 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0071 (2)0.0230 (2)−0.27529 (19)0.0475 (5)
C2−0.0626 (2)0.1317 (2)−0.36552 (17)0.0474 (5)
C3−0.0487 (2)0.2634 (2)−0.38156 (17)0.0477 (5)
H3−0.09410.3359−0.44250.057*
C40.0321 (2)0.2889 (2)−0.30787 (17)0.0415 (4)
C50.10006 (18)0.18534 (19)−0.21224 (16)0.0374 (4)
C60.0869 (2)0.0517 (2)−0.20168 (18)0.0436 (5)
H60.1341−0.0218−0.14210.052*
C70.16905 (19)0.21325 (18)−0.12259 (16)0.0377 (4)
C80.09802 (19)0.33217 (19)−0.07694 (17)0.0402 (4)
C90.2870 (2)0.2669 (2)0.05867 (18)0.0449 (5)
N40.35173 (17)0.15462 (17)0.01261 (15)0.0415 (4)
C110.3494 (3)0.6406 (4)−0.1188 (2)0.0874 (9)
H11A0.35320.5436−0.10720.131*
H11B0.25420.6937−0.09850.131*
H11C0.41670.6476−0.06990.131*
C120.3870 (3)0.6980 (3)−0.2442 (2)0.0762 (8)
H12A0.37800.7973−0.25640.091*
H12B0.31960.6896−0.29330.091*
C130.5808 (3)0.6803 (3)−0.4067 (2)0.0747 (7)
H13A0.66800.6141−0.42930.090*
H13B0.50590.6876−0.45640.090*
C140.6049 (6)0.8165 (4)−0.4284 (4)0.1406 (17)
H14A0.51650.8850−0.41400.211*
H14B0.63840.8432−0.50850.211*
H14C0.67560.8117−0.37700.211*
C150.5662 (2)0.4699 (3)−0.25663 (18)0.0520 (5)
C160.6740 (2)0.3853 (3)−0.1841 (2)0.0589 (6)
H160.72970.4241−0.15230.071*
C170.6985 (3)0.2419 (3)−0.1592 (2)0.0736 (7)
H170.77040.1825−0.10930.088*
C180.6163 (4)0.1865 (3)−0.2085 (3)0.0808 (8)
H180.63320.0894−0.19220.097*
C190.5097 (4)0.2736 (4)−0.2812 (3)0.0837 (9)
H190.45460.2352−0.31380.100*
C200.4836 (3)0.4154 (3)−0.3062 (2)0.0694 (7)
H200.41130.4745−0.35590.083*
N10.0461 (2)0.43164 (19)−0.33939 (16)0.0544 (5)
N2−0.1569 (2)0.1174 (3)−0.44496 (18)0.0654 (6)
N30.16215 (17)0.35220 (18)0.01183 (15)0.0448 (4)
C100.29895 (19)0.11832 (18)−0.07495 (16)0.0371 (4)
N50.5380 (2)0.6221 (2)−0.28078 (16)0.0585 (5)
O10.16331 (19)0.44533 (19)−0.33559 (18)0.0795 (6)
O2−0.05941 (19)0.52979 (17)−0.37394 (16)0.0724 (5)
O3−0.2340 (2)0.2254 (3)−0.50262 (19)0.1009 (7)
O4−0.1558 (3)0.0024 (3)−0.4513 (2)0.1051 (8)
O50.37052 (14)0.00914 (13)−0.10491 (13)0.0484 (4)
O60.33802 (18)0.28916 (18)0.13834 (16)0.0726 (5)
O7−0.01956 (14)0.41850 (15)−0.10903 (13)0.0552 (4)
Cl1−0.00919 (8)−0.14432 (7)−0.24327 (7)0.0795 (2)
H4A0.429 (3)0.103 (2)0.0413 (19)0.050 (6)*
H3A0.120 (2)0.420 (2)0.0409 (19)0.047 (6)*
H5A0.590 (3)0.644 (3)−0.238 (2)0.072 (8)*
U11U22U33U12U13U23
C10.0400 (10)0.0530 (12)0.0561 (12)−0.0093 (9)−0.0074 (9)−0.0267 (10)
C20.0352 (10)0.0704 (14)0.0425 (11)−0.0100 (9)−0.0085 (8)−0.0266 (10)
C30.0382 (10)0.0651 (13)0.0339 (10)−0.0044 (9)−0.0105 (8)−0.0107 (9)
C40.0354 (9)0.0466 (11)0.0399 (10)−0.0052 (8)−0.0075 (8)−0.0114 (8)
C50.0287 (9)0.0419 (10)0.0396 (10)0.0003 (7)−0.0082 (7)−0.0157 (8)
C60.0381 (10)0.0426 (11)0.0487 (11)−0.0008 (8)−0.0153 (8)−0.0153 (9)
C70.0334 (9)0.0368 (9)0.0419 (10)−0.0009 (7)−0.0133 (8)−0.0138 (8)
C80.0341 (9)0.0396 (10)0.0461 (11)−0.0008 (8)−0.0134 (8)−0.0150 (8)
C90.0386 (10)0.0433 (11)0.0538 (12)0.0008 (8)−0.0175 (9)−0.0212 (9)
N40.0323 (8)0.0398 (9)0.0508 (10)0.0047 (7)−0.0198 (7)−0.0178 (7)
C110.0686 (17)0.111 (2)0.0614 (17)0.0041 (16)−0.0067 (13)−0.0204 (16)
C120.0681 (16)0.0864 (19)0.0613 (16)0.0003 (14)−0.0242 (13)−0.0135 (14)
C130.0782 (18)0.098 (2)0.0536 (14)−0.0369 (16)−0.0194 (13)−0.0061 (13)
C140.221 (5)0.109 (3)0.104 (3)−0.084 (3)−0.027 (3)0.008 (2)
C150.0459 (11)0.0741 (15)0.0426 (11)−0.0209 (11)−0.0023 (9)−0.0205 (10)
C160.0425 (11)0.0852 (17)0.0492 (13)−0.0135 (11)−0.0030 (10)−0.0218 (12)
C170.0590 (15)0.0819 (19)0.0656 (16)−0.0052 (14)0.0084 (12)−0.0170 (14)
C180.090 (2)0.0781 (19)0.0766 (19)−0.0345 (17)0.0293 (17)−0.0260 (16)
C190.096 (2)0.104 (2)0.0735 (19)−0.059 (2)0.0094 (17)−0.0305 (17)
C200.0633 (15)0.101 (2)0.0587 (15)−0.0389 (14)−0.0094 (12)−0.0222 (14)
N10.0529 (11)0.0553 (11)0.0509 (11)−0.0123 (9)−0.0147 (9)−0.0040 (8)
N20.0491 (11)0.1064 (18)0.0543 (12)−0.0243 (12)−0.0102 (9)−0.0363 (12)
N30.0387 (9)0.0413 (9)0.0558 (10)0.0053 (7)−0.0188 (8)−0.0267 (8)
C100.0336 (9)0.0348 (9)0.0431 (10)−0.0032 (8)−0.0125 (8)−0.0127 (8)
N50.0554 (11)0.0807 (14)0.0446 (10)−0.0206 (10)−0.0213 (9)−0.0142 (10)
O10.0631 (11)0.0739 (12)0.1013 (14)−0.0317 (9)−0.0211 (10)0.0015 (10)
O20.0740 (11)0.0520 (9)0.0756 (12)−0.0005 (8)−0.0290 (9)0.0018 (8)
O30.0875 (14)0.1337 (19)0.0848 (14)−0.0213 (13)−0.0548 (12)−0.0209 (13)
O40.1107 (17)0.1282 (19)0.1117 (18)−0.0526 (15)−0.0386 (14)−0.0513 (15)
O50.0393 (7)0.0416 (7)0.0634 (9)0.0081 (6)−0.0221 (6)−0.0258 (7)
O60.0622 (10)0.0751 (11)0.0873 (12)0.0129 (8)−0.0443 (9)−0.0515 (10)
O70.0417 (8)0.0527 (8)0.0684 (10)0.0147 (6)−0.0284 (7)−0.0320 (7)
Cl10.0822 (5)0.0605 (4)0.1107 (6)−0.0254 (3)−0.0314 (4)−0.0274 (4)
C1—C61.381 (3)C12—H12B0.9700
C1—C21.391 (3)C13—C141.444 (4)
C1—Cl11.716 (2)C13—N51.511 (3)
C2—C31.365 (3)C13—H13A0.9700
C2—N21.462 (3)C13—H13B0.9700
C3—C41.371 (3)C14—H14A0.9600
C3—H30.9300C14—H14B0.9600
C4—C51.404 (3)C14—H14C0.9600
C4—N11.463 (3)C15—C161.368 (3)
C5—C61.392 (3)C15—C201.376 (3)
C5—C71.458 (2)C15—N51.457 (3)
C6—H60.9300C16—C171.375 (4)
C7—C81.412 (2)C16—H160.9300
C7—C101.417 (2)C17—C181.376 (4)
C8—O71.247 (2)C17—H170.9300
C8—N31.379 (2)C18—C191.367 (4)
C9—O61.222 (2)C18—H180.9300
C9—N31.348 (2)C19—C201.356 (4)
C9—N41.350 (2)C19—H190.9300
N4—C101.392 (2)C20—H200.9300
N4—H4A0.83 (2)N1—O11.208 (2)
C11—C121.490 (4)N1—O21.222 (2)
C11—H11A0.9600N2—O41.201 (3)
C11—H11B0.9600N2—O31.215 (3)
C11—H11C0.9600N3—H3A0.83 (2)
C12—N51.511 (3)C10—O51.239 (2)
C12—H12A0.9700N5—H5A0.87 (3)
C6—C1—C2118.98 (19)C14—C13—H13B108.7
C6—C1—Cl1117.21 (16)N5—C13—H13B108.7
C2—C1—Cl1123.67 (16)H13A—C13—H13B107.6
C3—C2—C1119.82 (17)C13—C14—H14A109.5
C3—C2—N2115.7 (2)C13—C14—H14B109.5
C1—C2—N2124.4 (2)H14A—C14—H14B109.5
C2—C3—C4120.06 (18)C13—C14—H14C109.5
C2—C3—H3120.0H14A—C14—H14C109.5
C4—C3—H3120.0H14B—C14—H14C109.5
C3—C4—C5122.90 (19)C16—C15—C20121.9 (2)
C3—C4—N1114.53 (17)C16—C15—N5118.7 (2)
C5—C4—N1122.53 (17)C20—C15—N5119.4 (2)
C6—C5—C4114.94 (17)C15—C16—C17118.7 (2)
C6—C5—C7120.57 (16)C15—C16—H16120.7
C4—C5—C7124.27 (17)C17—C16—H16120.7
C1—C6—C5123.20 (18)C16—C17—C18119.8 (3)
C1—C6—H6118.4C16—C17—H17120.1
C5—C6—H6118.4C18—C17—H17120.1
C8—C7—C10119.95 (16)C19—C18—C17120.2 (3)
C8—C7—C5118.54 (15)C19—C18—H18119.9
C10—C7—C5121.33 (15)C17—C18—H18119.9
O7—C8—N3117.64 (16)C20—C19—C18120.8 (3)
O7—C8—C7125.00 (16)C20—C19—H19119.6
N3—C8—C7117.34 (15)C18—C19—H19119.6
O6—C9—N3122.27 (17)C19—C20—C15118.6 (3)
O6—C9—N4121.96 (17)C19—C20—H20120.7
N3—C9—N4115.77 (17)C15—C20—H20120.7
C9—N4—C10125.86 (15)O1—N1—O2123.6 (2)
C9—N4—H4A115.2 (15)O1—N1—C4118.06 (18)
C10—N4—H4A118.9 (15)O2—N1—C4118.25 (18)
C12—C11—H11A109.5O4—N2—O3122.8 (2)
C12—C11—H11B109.5O4—N2—C2120.0 (2)
H11A—C11—H11B109.5O3—N2—C2117.2 (2)
C12—C11—H11C109.5C9—N3—C8125.13 (16)
H11A—C11—H11C109.5C9—N3—H3A116.8 (15)
H11B—C11—H11C109.5C8—N3—H3A118.1 (15)
C11—C12—N5112.2 (2)O5—C10—N4117.47 (15)
C11—C12—H12A109.2O5—C10—C7126.66 (16)
N5—C12—H12A109.2N4—C10—C7115.85 (15)
C11—C12—H12B109.2C15—N5—C13110.66 (19)
N5—C12—H12B109.2C15—N5—C12113.4 (2)
H12A—C12—H12B107.9C13—N5—C12113.49 (19)
C14—C13—N5114.3 (3)C15—N5—H5A110.8 (17)
C14—C13—H13A108.7C13—N5—H5A105.5 (17)
N5—C13—H13A108.7C12—N5—H5A102.4 (17)
C6—C1—C2—C31.4 (3)C17—C18—C19—C200.2 (4)
Cl1—C1—C2—C3177.04 (16)C18—C19—C20—C15−0.2 (4)
C6—C1—C2—N2−176.22 (18)C16—C15—C20—C190.6 (4)
Cl1—C1—C2—N2−0.6 (3)N5—C15—C20—C19−178.9 (2)
C1—C2—C3—C4−0.9 (3)C3—C4—N1—O1−136.1 (2)
N2—C2—C3—C4176.96 (17)C5—C4—N1—O141.9 (3)
C2—C3—C4—C5−1.9 (3)C3—C4—N1—O240.2 (3)
C2—C3—C4—N1176.06 (18)C5—C4—N1—O2−141.9 (2)
C3—C4—C5—C63.8 (3)C3—C2—N2—O4166.9 (2)
N1—C4—C5—C6−173.95 (17)C1—C2—N2—O4−15.4 (3)
C3—C4—C5—C7−170.75 (18)C3—C2—N2—O3−13.0 (3)
N1—C4—C5—C711.5 (3)C1—C2—N2—O3164.7 (2)
C2—C1—C6—C50.8 (3)O6—C9—N3—C8−179.2 (2)
Cl1—C1—C6—C5−175.12 (16)N4—C9—N3—C80.4 (3)
C4—C5—C6—C1−3.2 (3)O7—C8—N3—C9178.2 (2)
C7—C5—C6—C1171.53 (18)C7—C8—N3—C9−0.2 (3)
C6—C5—C7—C8−130.8 (2)C9—N4—C10—O5−178.0 (2)
C4—C5—C7—C843.4 (3)C9—N4—C10—C73.3 (3)
C6—C5—C7—C1044.3 (3)C8—C7—C10—O5178.5 (2)
C4—C5—C7—C10−141.4 (2)C5—C7—C10—O53.4 (3)
C10—C7—C8—O7−176.7 (2)C8—C7—C10—N4−3.0 (3)
C5—C7—C8—O7−1.5 (3)C5—C7—C10—N4−178.07 (17)
C10—C7—C8—N31.6 (3)C16—C15—N5—C13110.6 (2)
C5—C7—C8—N3176.84 (18)C20—C15—N5—C13−69.9 (3)
O6—C9—N4—C10177.5 (2)C16—C15—N5—C12−120.5 (2)
N3—C9—N4—C10−2.0 (3)C20—C15—N5—C1259.0 (3)
C20—C15—C16—C17−0.9 (3)C14—C13—N5—C15−159.4 (3)
N5—C15—C16—C17178.5 (2)C14—C13—N5—C1271.8 (4)
C15—C16—C17—C180.9 (4)C11—C12—N5—C1554.0 (3)
C16—C17—C18—C19−0.5 (4)C11—C12—N5—C13−178.6 (2)
D—H···AD—HH···AD···AD—H···A
N4—H4A···O5i0.83 (2)2.06 (2)2.892 (2)175 (2)
N3—H3A···O7ii0.83 (2)1.96 (2)2.794 (2)180 (3)
N5—H5A···O6iii0.87 (3)1.82 (3)2.677 (2)168 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N4—H4A⋯O5i 0.83 (2)2.06 (2)2.892 (2)175 (2)
N3—H3A⋯O7ii 0.83 (2)1.96 (2)2.794 (2)180 (3)
N5—H5A⋯O6iii 0.87 (3)1.82 (3)2.677 (2)168 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Triethyl-ammonium 2,4-dinitro-phenyl-barbiturate.

Authors:  Doraisamyraja Kalaivani; Rangasamy Malarvizhi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-26

3.  N,N-Diethyl-anilinium 2,4-dioxo-5-(2,4,6-trinitro-phen-yl)-1,2,3,4-tetra-hydro-pyrimi-din-6-olate.

Authors:  Manickam Buvaneswari; Doraisamyraja Kalaivani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30

4.  N,N-Diethyl-anilinium 5-(2,4-dinitro-phen-yl)-2,6-dioxo-1,2,3,6-tetra-hydro-pyrimidin-4-olate.

Authors:  Doraisamyraja Kalaivani; Govindan Mangaiyarkarasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-05
  4 in total
  1 in total

1.  Crystal structure of tri-methyl-ammonium 5-(2,4-di-nitro-phen-yl)-1,3-dimethyl-2,6-dioxo-1,2,3,6-tetra-hydro-pyrimidin-4-olate.

Authors:  Sridevi Gunaseelan; Kalaivani Doraisamyraja
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-09-13
  1 in total

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