Literature DB >> 21577990

Triethyl-ammonium 2,4-dinitro-phenyl-barbiturate.

Doraisamyraja Kalaivani1, Rangasamy Malarvizhi.   

Abstract

In the title mol-ecular salt [systematic name: triethylammonium 5-(2,4-dinitrophenyl)-2,6-dioxo-1,2,3,6-tetrahydropyrim-idin-4-olate], C(6)H(16)N(+)·C(10)H(5)N(4)O(7) (-), the cation and anion are linked by an N-H⋯O hydrogen bond. In the crystal, inversion-related barbiturate rings are centrosymmetrically connected through pairs of N-H⋯O hydrogen bonds, forming R(2) (2)(8)R(2) (2)(8) ring motifs.

Entities:  

Year:  2009        PMID: 21577990      PMCID: PMC2970263          DOI: 10.1107/S1600536809036976

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For further information on the anti­convulsant properties of the title compound and general background, see: Kalaivani et al. (2008 ▶). For a related structure, see: Craven (1964 ▶). For data on hydrogen-bond motifs in organic crystals, see: Allen et al. (1998 ▶).

Experimental

Crystal data

C6H16N+·C10H5N4O7 − M = 395.38 Monoclinic, a = 29.7900 (8) Å b = 10.4533 (3) Å c = 11.9606 (3) Å β = 97.903 (1)° V = 3689.20 (17) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.942, T max = 0.971 32882 measured reflections 3217 independent reflections 2493 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.109 S = 1.04 3217 reflections 268 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.46 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altornare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809036976/hb5061sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809036976/hb5061Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H16N+·C10H5N4O7F(000) = 1664
Mr = 395.38Dx = 1.424 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 8875 reflections
a = 29.7900 (8) Åθ = 2.5–24.5°
b = 10.4533 (3) ŵ = 0.11 mm1
c = 11.9606 (3) ÅT = 293 K
β = 97.903 (1)°Block, maroon
V = 3689.20 (17) Å30.30 × 0.20 × 0.20 mm
Z = 8
Bruker Kappa APEXII CCD diffractometer3217 independent reflections
Radiation source: fine-focus sealed tube2493 reflections with I > 2σ(I)
graphiteRint = 0.036
ω and φ scanθmax = 24.9°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 1999)h = −35→35
Tmin = 0.942, Tmax = 0.971k = −12→12
32882 measured reflectionsl = −13→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0467P)2 + 3.5895P] where P = (Fo2 + 2Fc2)/3
3217 reflections(Δ/σ)max < 0.001
268 parametersΔρmax = 0.46 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.49607 (6)0.30537 (17)0.47768 (17)0.0402 (5)
C20.43235 (6)0.33505 (16)0.32947 (15)0.0336 (4)
C30.42904 (6)0.20117 (16)0.31524 (15)0.0339 (4)
C40.45876 (6)0.11860 (16)0.38266 (15)0.0348 (4)
C50.39223 (6)0.15178 (15)0.23248 (14)0.0321 (4)
C60.34717 (6)0.18925 (16)0.22995 (14)0.0317 (4)
C70.31314 (6)0.15443 (17)0.14568 (15)0.0372 (4)
H70.28350.18200.14630.045*
C80.32439 (6)0.07760 (17)0.06070 (15)0.0371 (4)
C90.36810 (7)0.03485 (18)0.05876 (16)0.0408 (5)
H90.3751−0.01730.00060.049*
C100.40118 (7)0.07127 (17)0.14501 (16)0.0387 (5)
H100.43050.04110.14490.046*
C110.39539 (7)0.7557 (2)0.27509 (19)0.0498 (5)
H11A0.41260.76590.34950.060*
H11B0.37790.83310.25770.060*
C120.42740 (9)0.7390 (3)0.1905 (2)0.0700 (7)
H12A0.44250.65800.20220.105*
H12B0.44950.80650.19910.105*
H12C0.41090.74190.11580.105*
C130.33902 (8)0.6466 (2)0.37901 (18)0.0570 (6)
H13A0.32680.73160.38770.068*
H13B0.31370.58770.36590.068*
C140.36764 (10)0.6107 (2)0.48412 (19)0.0702 (7)
H14A0.38030.52740.47570.105*
H14B0.34970.60920.54480.105*
H14C0.39160.67200.50060.105*
C150.33107 (7)0.6313 (2)0.17207 (18)0.0494 (5)
H15A0.31450.55210.17680.059*
H15B0.34780.62430.10830.059*
C160.29765 (8)0.7386 (3)0.1498 (2)0.0690 (7)
H16A0.27920.74240.20960.104*
H16B0.27870.72400.07930.104*
H16C0.31360.81790.14640.104*
N10.46707 (5)0.37959 (15)0.40826 (14)0.0416 (4)
N20.49133 (5)0.17742 (14)0.46111 (14)0.0387 (4)
N30.33250 (6)0.26868 (15)0.31972 (14)0.0414 (4)
N40.28841 (7)0.04383 (17)−0.03058 (15)0.0515 (5)
N50.36397 (6)0.64590 (15)0.27695 (13)0.0387 (4)
O10.52439 (5)0.35119 (13)0.55104 (13)0.0575 (4)
O20.40649 (4)0.41466 (11)0.27608 (11)0.0425 (4)
O30.45764 (5)−0.00016 (12)0.38115 (12)0.0496 (4)
O40.35005 (6)0.25162 (15)0.41664 (12)0.0582 (4)
O50.30234 (5)0.34649 (15)0.29215 (14)0.0582 (4)
O60.24947 (6)0.0672 (2)−0.01885 (17)0.0964 (7)
O70.29920 (6)−0.00325 (19)−0.11540 (15)0.0808 (6)
H10.4688 (7)0.459 (2)0.4188 (17)0.046 (6)*
H20.5078 (7)0.133 (2)0.5064 (19)0.050 (6)*
H50.3796 (7)0.577 (2)0.2791 (17)0.044 (6)*
U11U22U33U12U13U23
C10.0371 (10)0.0255 (9)0.0527 (12)−0.0008 (8)−0.0122 (9)−0.0017 (8)
C20.0337 (10)0.0252 (9)0.0386 (10)0.0012 (7)−0.0070 (8)0.0001 (7)
C30.0353 (10)0.0231 (9)0.0395 (10)0.0002 (7)−0.0087 (8)−0.0012 (7)
C40.0373 (10)0.0231 (9)0.0408 (10)0.0002 (7)−0.0061 (8)−0.0025 (7)
C50.0393 (10)0.0194 (8)0.0344 (10)−0.0015 (7)−0.0058 (8)0.0035 (7)
C60.0388 (10)0.0247 (9)0.0300 (9)−0.0034 (7)−0.0005 (8)0.0003 (7)
C70.0349 (10)0.0353 (10)0.0394 (11)−0.0039 (8)−0.0016 (8)0.0028 (8)
C80.0443 (11)0.0295 (9)0.0335 (10)−0.0057 (8)−0.0092 (8)−0.0003 (8)
C90.0537 (12)0.0284 (9)0.0382 (10)0.0004 (9)−0.0019 (9)−0.0062 (8)
C100.0410 (11)0.0283 (9)0.0441 (11)0.0031 (8)−0.0044 (9)−0.0032 (8)
C110.0497 (13)0.0374 (11)0.0579 (13)−0.0010 (9)−0.0077 (10)0.0042 (10)
C120.0664 (16)0.0652 (16)0.0797 (18)−0.0033 (13)0.0145 (14)0.0200 (14)
C130.0710 (15)0.0484 (13)0.0549 (14)0.0046 (11)0.0203 (12)−0.0038 (11)
C140.107 (2)0.0575 (15)0.0484 (14)0.0062 (14)0.0207 (14)0.0066 (11)
C150.0528 (13)0.0432 (12)0.0495 (12)−0.0039 (10)−0.0029 (10)−0.0025 (10)
C160.0522 (14)0.0725 (17)0.0766 (17)0.0098 (12)−0.0119 (12)0.0106 (14)
N10.0444 (10)0.0180 (8)0.0554 (10)−0.0014 (7)−0.0185 (8)−0.0011 (7)
N20.0391 (9)0.0227 (8)0.0480 (10)0.0024 (7)−0.0161 (8)0.0015 (7)
N30.0436 (10)0.0370 (9)0.0435 (10)−0.0082 (8)0.0053 (8)−0.0049 (7)
N40.0576 (12)0.0441 (10)0.0466 (11)−0.0041 (9)−0.0151 (9)−0.0070 (8)
N50.0508 (10)0.0255 (8)0.0392 (9)0.0094 (8)0.0041 (7)0.0014 (7)
O10.0558 (9)0.0284 (7)0.0756 (10)−0.0022 (6)−0.0366 (8)−0.0024 (7)
O20.0464 (8)0.0225 (6)0.0522 (8)0.0041 (6)−0.0162 (6)0.0014 (6)
O30.0594 (9)0.0205 (7)0.0600 (9)0.0023 (6)−0.0234 (7)−0.0011 (6)
O40.0764 (11)0.0639 (10)0.0330 (8)−0.0074 (8)0.0031 (7)−0.0084 (7)
O50.0499 (9)0.0512 (9)0.0730 (11)0.0085 (8)0.0067 (8)−0.0125 (8)
O60.0495 (11)0.150 (2)0.0822 (14)−0.0072 (12)−0.0177 (10)−0.0414 (13)
O70.0883 (13)0.0883 (14)0.0564 (11)0.0148 (11)−0.0234 (9)−0.0350 (10)
C1—O11.228 (2)C12—H12A0.9600
C1—N21.357 (2)C12—H12B0.9600
C1—N11.357 (2)C12—H12C0.9600
C2—O21.248 (2)C13—C141.467 (3)
C2—N11.381 (2)C13—N51.514 (3)
C2—C31.412 (2)C13—H13A0.9700
C3—C41.408 (2)C13—H13B0.9700
C3—C51.466 (2)C14—H14A0.9600
C4—O31.242 (2)C14—H14B0.9600
C4—N21.396 (2)C14—H14C0.9600
C5—C61.395 (2)C15—N51.490 (2)
C5—C101.397 (3)C15—C161.498 (3)
C6—C71.377 (2)C15—H15A0.9700
C6—N31.471 (2)C15—H15B0.9700
C7—C81.373 (3)C16—H16A0.9600
C7—H70.9300C16—H16B0.9600
C8—C91.380 (3)C16—H16C0.9600
C8—N41.464 (2)N1—H10.84 (2)
C9—C101.379 (3)N2—H20.82 (2)
C9—H90.9300N3—O41.217 (2)
C10—H100.9300N3—O51.223 (2)
C11—N51.483 (3)N4—O71.210 (2)
C11—C121.492 (3)N4—O61.212 (2)
C11—H11A0.9700N5—H50.85 (2)
C11—H11B0.9700
O1—C1—N2122.44 (17)C14—C13—N5113.4 (2)
O1—C1—N1122.11 (17)C14—C13—H13A108.9
N2—C1—N1115.45 (16)N5—C13—H13A108.9
O2—C2—N1118.42 (15)C14—C13—H13B108.9
O2—C2—C3124.84 (16)N5—C13—H13B108.9
N1—C2—C3116.74 (15)H13A—C13—H13B107.7
C4—C3—C2120.71 (16)C13—C14—H14A109.5
C4—C3—C5121.58 (15)C13—C14—H14B109.5
C2—C3—C5117.63 (15)H14A—C14—H14B109.5
O3—C4—N2117.69 (16)C13—C14—H14C109.5
O3—C4—C3126.22 (16)H14A—C14—H14C109.5
N2—C4—C3116.04 (15)H14B—C14—H14C109.5
C6—C5—C10115.80 (16)N5—C15—C16114.65 (18)
C6—C5—C3122.95 (16)N5—C15—H15A108.6
C10—C5—C3121.05 (17)C16—C15—H15A108.6
C7—C6—C5123.46 (16)N5—C15—H15B108.6
C7—C6—N3114.89 (16)C16—C15—H15B108.6
C5—C6—N3121.64 (15)H15A—C15—H15B107.6
C8—C7—C6117.81 (17)C15—C16—H16A109.5
C8—C7—H7121.1C15—C16—H16B109.5
C6—C7—H7121.1H16A—C16—H16B109.5
C7—C8—C9121.94 (16)C15—C16—H16C109.5
C7—C8—N4117.70 (18)H16A—C16—H16C109.5
C9—C8—N4120.34 (17)H16B—C16—H16C109.5
C10—C9—C8118.50 (17)C1—N1—C2125.39 (16)
C10—C9—H9120.8C1—N1—H1116.9 (14)
C8—C9—H9120.8C2—N1—H1117.4 (14)
C9—C10—C5122.44 (18)C1—N2—C4125.53 (16)
C9—C10—H10118.8C1—N2—H2114.8 (16)
C5—C10—H10118.8C4—N2—H2119.4 (16)
N5—C11—C12112.55 (18)O4—N3—O5123.88 (17)
N5—C11—H11A109.1O4—N3—C6118.73 (16)
C12—C11—H11A109.1O5—N3—C6117.36 (16)
N5—C11—H11B109.1O7—N4—O6123.20 (18)
C12—C11—H11B109.1O7—N4—C8118.14 (19)
H11A—C11—H11B107.8O6—N4—C8118.64 (19)
C11—C12—H12A109.5C11—N5—C15114.20 (16)
C11—C12—H12B109.5C11—N5—C13112.90 (17)
H12A—C12—H12B109.5C15—N5—C13109.90 (17)
C11—C12—H12C109.5C11—N5—H5107.9 (14)
H12A—C12—H12C109.5C15—N5—H5103.4 (14)
H12B—C12—H12C109.5C13—N5—H5107.9 (14)
O2—C2—C3—C4−177.48 (19)C3—C5—C10—C9−172.52 (17)
N1—C2—C3—C42.8 (3)O1—C1—N1—C2−175.1 (2)
O2—C2—C3—C5−0.7 (3)N2—C1—N1—C24.3 (3)
N1—C2—C3—C5179.64 (17)O2—C2—N1—C1175.63 (19)
C2—C3—C4—O3176.4 (2)C3—C2—N1—C1−4.7 (3)
C5—C3—C4—O3−0.2 (3)O1—C1—N2—C4177.2 (2)
C2—C3—C4—N2−1.0 (3)N1—C1—N2—C4−2.2 (3)
C5—C3—C4—N2−177.72 (17)O3—C4—N2—C1−177.0 (2)
C4—C3—C5—C6126.7 (2)C3—C4—N2—C10.7 (3)
C2—C3—C5—C6−50.1 (3)C7—C6—N3—O4142.69 (17)
C4—C3—C5—C10−58.6 (3)C5—C6—N3—O4−36.5 (2)
C2—C3—C5—C10124.63 (19)C7—C6—N3—O5−35.6 (2)
C10—C5—C6—C7−2.2 (3)C5—C6—N3—O5145.17 (17)
C3—C5—C6—C7172.76 (17)C7—C8—N4—O7166.62 (19)
C10—C5—C6—N3176.93 (15)C9—C8—N4—O7−12.1 (3)
C3—C5—C6—N3−8.1 (3)C7—C8—N4—O6−11.6 (3)
C5—C6—C7—C80.7 (3)C9—C8—N4—O6169.7 (2)
N3—C6—C7—C8−178.44 (16)C12—C11—N5—C15−66.8 (2)
C6—C7—C8—C90.5 (3)C12—C11—N5—C13166.72 (18)
C6—C7—C8—N4−178.22 (16)C16—C15—N5—C11−65.2 (3)
C7—C8—C9—C10−0.2 (3)C16—C15—N5—C1362.8 (2)
N4—C8—C9—C10178.53 (17)C14—C13—N5—C11−73.7 (2)
C8—C9—C10—C5−1.4 (3)C14—C13—N5—C15157.55 (19)
C6—C5—C10—C92.5 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.84 (2)2.02 (2)2.861 (2)177 (2)
N2—H2···O3ii0.82 (2)2.10 (2)2.918 (2)172 (2)
N5—H5···O20.85 (2)1.88 (2)2.730 (2)172 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.84 (2)2.02 (2)2.861 (2)177 (2)
N2—H2⋯O3ii0.82 (2)2.10 (2)2.918 (2)172 (2)
N5—H5⋯O20.85 (2)1.88 (2)2.730 (2)172 (2)

Symmetry codes: (i) ; (ii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  11 in total

1.  N,N-Diethyl-2-hy-droxy-ethanaminium 2,6-dioxo-5-(2,4,6-trinitro-phen-yl)-1,2,3,6-tetra-hydro-pyrimidin-4-olate dihydrate.

Authors:  Manickam Buvaneswari; Doraisamyraja Kalaivani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-20

2.  Trimethyl-ammonium 2,6-dioxo-5-(2,4,6-trinitro-phen-yl)-1,2,3,6-tetra-hydro-pyrimidin-4-olate.

Authors:  D Kalaivani; M Buvaneswari; S Rajeswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-07

3.  N,N-Diethyl-anilinium 2,4-dioxo-5-(2,4,6-trinitro-phen-yl)-1,2,3,4-tetra-hydro-pyrimi-din-6-olate.

Authors:  Manickam Buvaneswari; Doraisamyraja Kalaivani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30

4.  N,N-Diethyl-2-hy-droxy-ethanaminium 5-(5-chloro-2,4-dinitro-phen-yl)-2,6-dioxo-1,2,3,6-tetra-hydro-pyrimidin-4-olate hemihydrate.

Authors:  Rajamanickam Babykala; Doraisamyraja Kalaivani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-31

5.  Triethyl-ammonium 1,3-dimethyl-5-(2,4,6-trinitro-phenyl)barbiturate.

Authors:  Kulandaiya Rajamani; Doraisamyraja Kalaivani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-10

6.  2-Methyl-pyridinium 5-(2,4-dinitro-phen-yl)-1,3-dimethyl-barbiturate.

Authors:  Gunaseelan Sridevi; Doraisamyraja Kalaivani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-14

7.  N,N-Diethyl-anilinium 5-(5-chloro-2,4-dinitro-phen-yl)-2,6-dioxo-1,2,3,6-tetra-hydro-pyrimidin-4-olate.

Authors:  R Babykala; D Kalaivani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-20

8.  N,N-Diethyl-anilinium 5-(2,4-dinitro-phen-yl)-2,6-dioxo-1,2,3,6-tetra-hydro-pyrimidin-4-olate.

Authors:  Doraisamyraja Kalaivani; Govindan Mangaiyarkarasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-05

9.  Trimethyl-ammonium 5-(2,4-dinitro-phenyl)-2,6-dioxo-1,2,3,6-tetra-hydro-pyrimidin-4-olate 0.125-hydrate.

Authors:  Govindan Mangaiyarkarasi; Doraisamyraja Kalaivani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-28

10.  Crystal structure of tri-methyl-ammonium 5-(2,4-di-nitro-phen-yl)-1,3-dimethyl-2,6-dioxo-1,2,3,6-tetra-hydro-pyrimidin-4-olate.

Authors:  Sridevi Gunaseelan; Kalaivani Doraisamyraja
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-09-13
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