Literature DB >> 23476564

2-(2,4-Dichloro-phen-oxy-meth-yl)-5-(4-methyl-phen-yl)imidazo[2,1-b][1,3,4]thia-diazole.

Bakr F Abdel-Wahab1, Hanan A Mohamed, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C18H13Cl2N3OS, the eight atoms comprising the central imidazo/thia-diazo-lethia-diazole residue are coplanar (r.m.s. deviation = 0.009 Å). The dihedral angle of 8.72 (13)° between the dichloro-benzene and tolyl rings reflects a twist about the O-C(benzene) bond; the Cm-O-Cb-Cb torsion angle = -168.5 (2)° (m = methyl-ene C and b is benzene C). Supra-molecular tapes along the b axis are found in the crystal structure which are mediated by π-π inter-actions occurring between centrosymmetrically related thia-diazole rings [inter-ring centroid distance = 3.6907 (16) Å] and between the benzene and tolyl rings [inter-ring centroid distance = 3.7597 (16) Å].

Entities:  

Year:  2013        PMID: 23476564      PMCID: PMC3588533          DOI: 10.1107/S160053681300384X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of imidazothia­dia­zo­les, see: Abdel-Wahab et al. (2011 ▶); Karki et al. (2011 ▶); Khazi et al. (2011 ▶). For the synthesis, see: Abdel-Wahab et al. (2011 ▶). For a related structure, see: Fun et al. (2011 ▶).

Experimental

Crystal data

C18H13Cl2N3OS M = 390.27 Triclinic, a = 8.3015 (7) Å b = 8.3053 (7) Å c = 14.4374 (13) Å α = 97.180 (7)° β = 92.644 (7)° γ = 118.996 (9)° V = 857.25 (13) Å3 Z = 2 Mo Kα radiation μ = 0.51 mm−1 T = 295 K 0.40 × 0.30 × 0.20 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.856, T max = 1.000 8391 measured reflections 3932 independent reflections 2659 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.172 S = 0.98 3932 reflections 227 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681300384X/hg5290sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681300384X/hg5290Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H13Cl2N3OSZ = 2
Mr = 390.27F(000) = 400
Triclinic, P1Dx = 1.512 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.3015 (7) ÅCell parameters from 1915 reflections
b = 8.3053 (7) Åθ = 2.8–27.5°
c = 14.4374 (13) ŵ = 0.51 mm1
α = 97.180 (7)°T = 295 K
β = 92.644 (7)°Prism, colourless
γ = 118.996 (9)°0.40 × 0.30 × 0.20 mm
V = 857.25 (13) Å3
Agilent SuperNova Dual diffractometer with an Atlas detector3932 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2659 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.028
Detector resolution: 10.4041 pixels mm-1θmax = 27.5°, θmin = 2.8°
ω scanh = −10→10
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −10→10
Tmin = 0.856, Tmax = 1.000l = −18→15
8391 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.172H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
3932 reflections(Δ/σ)max = 0.001
227 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.83905 (10)0.40968 (12)0.15939 (6)0.0701 (3)
Cl20.16453 (12)0.30193 (13)0.04111 (6)0.0730 (3)
S11.00105 (10)0.30491 (9)0.41463 (5)0.0493 (2)
O10.6883 (3)0.3049 (3)0.32904 (14)0.0540 (5)
C10.5593 (3)0.3020 (3)0.26664 (19)0.0429 (6)
C20.6151 (4)0.3510 (3)0.1799 (2)0.0462 (6)
C30.4962 (4)0.3525 (3)0.1110 (2)0.0494 (6)
H30.53540.38470.05340.059*
C40.3174 (4)0.3053 (3)0.12837 (19)0.0476 (6)
C50.2607 (4)0.2588 (4)0.2137 (2)0.0522 (7)
H50.14080.22860.22520.063*
C60.3797 (4)0.2565 (4)0.2827 (2)0.0497 (6)
H60.33960.22440.34020.060*
C70.6268 (4)0.2235 (4)0.40983 (19)0.0492 (6)
H7A0.52520.09640.39200.059*
H7B0.58440.29460.44970.059*
C80.7883 (4)0.2255 (3)0.46024 (18)0.0431 (6)
C91.0864 (4)0.2605 (3)0.51522 (18)0.0444 (6)
C101.0183 (4)0.1610 (4)0.6497 (2)0.0506 (6)
H100.95730.11540.70090.061*
C111.1978 (4)0.2117 (3)0.63753 (18)0.0444 (6)
C121.3346 (4)0.2063 (3)0.70303 (19)0.0455 (6)
C131.5166 (4)0.2710 (4)0.6864 (2)0.0538 (7)
H131.55490.32040.63190.065*
C141.6426 (4)0.2638 (4)0.7489 (2)0.0584 (7)
H141.76440.30990.73580.070*
C151.5936 (4)0.1901 (4)0.8307 (2)0.0541 (7)
C161.4112 (5)0.1263 (4)0.8480 (2)0.0650 (8)
H161.37320.07690.90250.078*
C171.2846 (4)0.1347 (4)0.7856 (2)0.0607 (8)
H171.16350.09150.79930.073*
C181.7309 (5)0.1820 (4)0.8983 (2)0.0712 (9)
H18A1.81260.15320.86400.107*
H18B1.66610.08690.93550.107*
H18C1.80190.30060.93890.107*
N10.7783 (3)0.1707 (3)0.54018 (17)0.0506 (5)
N20.9469 (3)0.1916 (3)0.57041 (15)0.0448 (5)
N31.2402 (3)0.2741 (3)0.55163 (15)0.0483 (5)
U11U22U33U12U13U23
Cl10.0431 (4)0.1083 (6)0.0602 (5)0.0340 (4)0.0157 (4)0.0301 (4)
Cl20.0630 (5)0.1060 (6)0.0645 (5)0.0519 (5)−0.0016 (4)0.0230 (5)
S10.0468 (4)0.0648 (4)0.0379 (4)0.0278 (3)0.0067 (3)0.0129 (3)
O10.0417 (10)0.0749 (11)0.0495 (12)0.0280 (9)0.0083 (9)0.0273 (9)
C10.0371 (13)0.0467 (12)0.0439 (15)0.0189 (11)0.0054 (11)0.0120 (11)
C20.0374 (14)0.0519 (13)0.0486 (16)0.0202 (12)0.0068 (12)0.0136 (12)
C30.0496 (16)0.0583 (15)0.0438 (16)0.0277 (14)0.0094 (13)0.0153 (12)
C40.0454 (15)0.0534 (13)0.0480 (16)0.0273 (12)0.0015 (12)0.0108 (12)
C50.0411 (15)0.0637 (15)0.0578 (18)0.0289 (13)0.0095 (14)0.0165 (14)
C60.0447 (15)0.0623 (15)0.0467 (16)0.0275 (13)0.0112 (13)0.0174 (13)
C70.0462 (15)0.0559 (14)0.0464 (16)0.0244 (13)0.0061 (13)0.0155 (12)
C80.0450 (14)0.0421 (12)0.0401 (15)0.0201 (11)0.0035 (12)0.0070 (11)
C90.0441 (14)0.0473 (13)0.0389 (15)0.0212 (12)0.0047 (12)0.0047 (11)
C100.0479 (16)0.0593 (14)0.0470 (16)0.0263 (13)0.0054 (13)0.0188 (13)
C110.0471 (15)0.0400 (12)0.0432 (15)0.0208 (11)−0.0017 (12)0.0039 (11)
C120.0445 (15)0.0424 (12)0.0434 (15)0.0193 (12)−0.0055 (12)−0.0001 (11)
C130.0531 (17)0.0679 (16)0.0442 (16)0.0328 (14)0.0044 (13)0.0102 (13)
C140.0512 (17)0.0751 (18)0.0528 (18)0.0372 (15)−0.0016 (14)0.0013 (15)
C150.0609 (19)0.0463 (14)0.0535 (18)0.0282 (14)−0.0088 (14)0.0016 (12)
C160.066 (2)0.0637 (17)0.0558 (19)0.0232 (16)−0.0040 (16)0.0218 (15)
C170.0493 (17)0.0652 (17)0.0586 (19)0.0193 (14)0.0005 (15)0.0217 (15)
C180.072 (2)0.0674 (17)0.075 (2)0.0387 (17)−0.0184 (18)0.0059 (17)
N10.0425 (13)0.0618 (12)0.0509 (14)0.0255 (11)0.0078 (11)0.0217 (11)
N20.0397 (12)0.0514 (11)0.0443 (13)0.0218 (10)0.0059 (10)0.0141 (10)
N30.0427 (12)0.0599 (12)0.0424 (13)0.0252 (11)0.0050 (10)0.0107 (10)
Cl1—C21.729 (3)C10—C111.365 (4)
Cl2—C41.734 (3)C10—N21.373 (3)
S1—C91.743 (3)C10—H100.9300
S1—C81.753 (3)C11—N31.398 (3)
O1—C11.356 (3)C11—C121.465 (4)
O1—C71.413 (3)C12—C131.381 (4)
C1—C61.388 (4)C12—C171.390 (4)
C1—C21.395 (4)C13—C141.379 (4)
C2—C31.374 (4)C13—H130.9300
C3—C41.384 (4)C14—C151.384 (4)
C3—H30.9300C14—H140.9300
C4—C51.373 (4)C15—C161.388 (4)
C5—C61.378 (4)C15—C181.499 (4)
C5—H50.9300C16—C171.386 (4)
C6—H60.9300C16—H160.9300
C7—C81.487 (4)C17—H170.9300
C7—H7A0.9700C18—H18A0.9600
C7—H7B0.9700C18—H18B0.9600
C8—N11.284 (3)C18—H18C0.9600
C9—N31.305 (3)N1—N21.367 (3)
C9—N21.364 (3)
C9—S1—C888.01 (12)N2—C10—H10127.3
C1—O1—C7117.4 (2)C10—C11—N3110.8 (2)
O1—C1—C6125.4 (2)C10—C11—C12126.9 (3)
O1—C1—C2116.3 (2)N3—C11—C12122.2 (2)
C6—C1—C2118.3 (3)C13—C12—C17117.1 (3)
C3—C2—C1121.5 (2)C13—C12—C11122.4 (3)
C3—C2—Cl1119.7 (2)C17—C12—C11120.5 (2)
C1—C2—Cl1118.7 (2)C14—C13—C12121.3 (3)
C2—C3—C4119.2 (3)C14—C13—H13119.3
C2—C3—H3120.4C12—C13—H13119.3
C4—C3—H3120.4C13—C14—C15122.0 (3)
C5—C4—C3120.1 (3)C13—C14—H14119.0
C5—C4—Cl2120.3 (2)C15—C14—H14119.0
C3—C4—Cl2119.6 (2)C14—C15—C16116.8 (3)
C4—C5—C6120.7 (2)C14—C15—C18121.9 (3)
C4—C5—H5119.6C16—C15—C18121.3 (3)
C6—C5—H5119.6C17—C16—C15121.2 (3)
C5—C6—C1120.2 (3)C17—C16—H16119.4
C5—C6—H6119.9C15—C16—H16119.4
C1—C6—H6119.9C16—C17—C12121.5 (3)
O1—C7—C8106.6 (2)C16—C17—H17119.3
O1—C7—H7A110.4C12—C17—H17119.3
C8—C7—H7A110.4C15—C18—H18A109.5
O1—C7—H7B110.4C15—C18—H18B109.5
C8—C7—H7B110.4H18A—C18—H18B109.5
H7A—C7—H7B108.6C15—C18—H18C109.5
N1—C8—C7121.1 (2)H18A—C18—H18C109.5
N1—C8—S1116.9 (2)H18B—C18—H18C109.5
C7—C8—S1121.93 (19)C8—N1—N2108.3 (2)
N3—C9—N2113.1 (2)C9—N2—N1118.9 (2)
N3—C9—S1139.0 (2)C9—N2—C10106.8 (2)
N2—C9—S1107.86 (19)N1—N2—C10134.3 (2)
C11—C10—N2105.4 (2)C9—N3—C11103.8 (2)
C11—C10—H10127.3
C7—O1—C1—C612.1 (4)C10—C11—C12—C173.8 (4)
C7—O1—C1—C2−168.5 (2)N3—C11—C12—C17−176.8 (2)
O1—C1—C2—C3179.8 (2)C17—C12—C13—C140.3 (4)
C6—C1—C2—C3−0.8 (4)C11—C12—C13—C14−179.7 (2)
O1—C1—C2—Cl10.1 (3)C12—C13—C14—C150.7 (4)
C6—C1—C2—Cl1179.52 (18)C13—C14—C15—C16−1.2 (4)
C1—C2—C3—C40.4 (4)C13—C14—C15—C18179.8 (3)
Cl1—C2—C3—C4−179.96 (18)C14—C15—C16—C170.6 (4)
C2—C3—C4—C50.4 (4)C18—C15—C16—C17179.7 (3)
C2—C3—C4—Cl2−178.67 (19)C15—C16—C17—C120.4 (4)
C3—C4—C5—C6−0.7 (4)C13—C12—C17—C16−0.8 (4)
Cl2—C4—C5—C6178.4 (2)C11—C12—C17—C16179.2 (3)
C4—C5—C6—C10.2 (4)C7—C8—N1—N2−178.7 (2)
O1—C1—C6—C5179.9 (2)S1—C8—N1—N20.5 (3)
C2—C1—C6—C50.5 (4)N3—C9—N2—N1179.9 (2)
C1—O1—C7—C8173.7 (2)S1—C9—N2—N10.0 (3)
O1—C7—C8—N1175.6 (2)N3—C9—N2—C100.9 (3)
O1—C7—C8—S1−3.6 (3)S1—C9—N2—C10−178.94 (16)
C9—S1—C8—N1−0.4 (2)C8—N1—N2—C9−0.3 (3)
C9—S1—C8—C7178.8 (2)C8—N1—N2—C10178.3 (3)
C8—S1—C9—N3−179.7 (3)C11—C10—N2—C9−0.6 (3)
C8—S1—C9—N20.19 (17)C11—C10—N2—N1−179.3 (2)
N2—C10—C11—N30.1 (3)N2—C9—N3—C11−0.8 (3)
N2—C10—C11—C12179.6 (2)S1—C9—N3—C11179.0 (2)
C10—C11—C12—C13−176.2 (2)C10—C11—N3—C90.4 (3)
N3—C11—C12—C133.2 (3)C12—C11—N3—C9−179.1 (2)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and biological evaluation of novel 2-aralkyl-5-substituted-6-(4'-fluorophenyl)-imidazo[2,1-b][1,3,4]thiadiazole derivatives as potent anticancer agents.

Authors:  Subhas S Karki; Kuppusamy Panjamurthy; Sujeet Kumar; Mridula Nambiar; Sureshbabu A Ramareddy; Kishore K Chiruvella; Sathees C Raghavan
Journal:  Eur J Med Chem       Date:  2011-03-04       Impact factor: 6.514

3.  2-Isobutyl-6-phenyl-imidazo[2,1-b][1,3,4]thia-diazole.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; D Jagadeesh Prasad; Prakash Anil Castelino; V V Anitha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08
  3 in total

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