Literature DB >> 23476548

3-[(4-Oxo-4H-thio-chromen-3-yl)meth-yl]-4H-thio-chromen-4-one.

M Somasundaram1, S Athavan, K K Balasubramanian, R Saiganesh, S Kabilan.   

Abstract

The title mol-ecule, C19H12S2O2, lies on a twofold rotation axis. The thio-chromonone unit is essentially planar, with a maximum deviation of 0.0491 (14) Å. The dihedral angle between the thio-chromenone ring systems is 64.48 (4)°. In the crystal, there are weak π-π stacking inter-actions, with a centroid-centroid distance of 3.7147 (9) Å.

Entities:  

Year:  2013        PMID: 23476548      PMCID: PMC3588462          DOI: 10.1107/S1600536813001906

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For backgound to bis-chromonones, see: Santhosh & Balasubramanian (1991 ▶); Panja et al. (2009 ▶). For related structures, see: Ambartsumyan et al. (2012 ▶); Nyburg et al. (1986 ▶); Li et al. (2010 ▶).

Experimental

Crystal data

C19H12O2S2 M = 336.41 Monoclinic, a = 11.9480 (5) Å b = 11.8649 (5) Å c = 11.1416 (5) Å β = 108.918 (2)° V = 1494.14 (11) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 298 K 0.38 × 0.28 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.875, T max = 0.931 5040 measured reflections 1631 independent reflections 1410 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.118 S = 0.88 1631 reflections 109 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and Jmol (Hanson, 2010 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813001906/lh5551sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813001906/lh5551Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813001906/lh5551Isup3.cdx Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813001906/lh5551Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report Enhanced figure: interactive version of Fig. 2
C19H12O2S2F(000) = 696
Mr = 336.41Dx = 1.495 Mg m3
Monoclinic, C2/cMelting point = 489–493 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 11.9480 (5) ÅCell parameters from 2970 reflections
b = 11.8649 (5) Åθ = 2.5–28.2°
c = 11.1416 (5) ŵ = 0.36 mm1
β = 108.918 (2)°T = 298 K
V = 1494.14 (11) Å3Block, yellow
Z = 40.38 × 0.28 × 0.20 mm
Bruker SMART CCD diffractometer1631 independent reflections
Radiation source: fine-focus sealed tube1410 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.019
φ and ω scansθmax = 28.3°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −13→13
Tmin = 0.875, Tmax = 0.931k = −15→15
5040 measured reflectionsl = −8→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H atoms treated by a mixture of independent and constrained refinement
S = 0.88w = 1/[σ2(Fo2) + (0.1P)2 + 0.4829P] where P = (Fo2 + 2Fc2)/3
1631 reflections(Δ/σ)max < 0.001
109 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.68093 (16)0.04971 (13)−0.09101 (16)0.0468 (4)
H10.63210.0231−0.16890.056*
C20.79824 (17)0.02577 (14)−0.05263 (17)0.0510 (4)
H20.8291−0.0174−0.10410.061*
C30.87278 (15)0.06556 (14)0.06363 (17)0.0481 (4)
H30.95350.05090.08870.058*
C40.82636 (14)0.12635 (14)0.14060 (15)0.0408 (4)
H40.87630.15170.21860.049*
C50.70544 (14)0.15121 (11)0.10466 (13)0.0324 (3)
C60.66133 (13)0.21467 (12)0.19414 (13)0.0340 (3)
C70.53715 (13)0.24814 (11)0.15575 (13)0.0331 (3)
C80.45826 (13)0.22113 (13)0.04278 (13)0.0364 (4)
H80.38140.24670.02780.044*
C90.63250 (13)0.11413 (12)−0.01442 (13)0.0345 (3)
C100.50000.31787 (18)0.25000.0384 (5)
H180.4303 (16)0.3692 (14)0.2050 (18)0.043 (5)*
O10.72943 (11)0.23896 (11)0.29985 (11)0.0513 (3)
S10.48288 (3)0.14521 (3)−0.07650 (3)0.04148 (19)
U11U22U33U12U13U23
C10.0538 (12)0.0488 (8)0.0385 (8)−0.0005 (7)0.0159 (7)−0.0020 (6)
C20.0548 (12)0.0519 (9)0.0530 (9)0.0107 (8)0.0265 (8)0.0016 (7)
C30.0365 (10)0.0540 (9)0.0568 (10)0.0096 (7)0.0190 (8)0.0131 (8)
C40.0316 (10)0.0500 (8)0.0374 (8)0.0021 (6)0.0066 (7)0.0101 (6)
C50.0314 (9)0.0372 (7)0.0278 (7)−0.0021 (5)0.0083 (6)0.0080 (5)
C60.0290 (8)0.0439 (7)0.0273 (6)−0.0050 (6)0.0068 (6)0.0054 (5)
C70.0316 (9)0.0382 (7)0.0299 (6)−0.0017 (6)0.0103 (6)0.0062 (5)
C80.0269 (9)0.0492 (8)0.0319 (7)0.0002 (6)0.0079 (6)0.0060 (5)
C90.0340 (9)0.0386 (7)0.0297 (7)−0.0019 (6)0.0089 (6)0.0054 (5)
C100.0396 (14)0.0384 (10)0.0384 (10)0.0000.0140 (9)0.000
O10.0351 (7)0.0820 (8)0.0311 (6)−0.0044 (5)0.0027 (5)−0.0081 (5)
S10.0317 (4)0.0602 (3)0.0272 (2)−0.00364 (15)0.00220 (19)−0.00228 (14)
C1—C21.356 (3)C5—C61.476 (2)
C1—C91.403 (2)C6—O11.2291 (18)
C1—H10.9300C6—C71.460 (2)
C2—C31.395 (3)C7—C81.344 (2)
C2—H20.9300C7—C101.5120 (18)
C3—C41.368 (2)C8—S11.7082 (15)
C3—H30.9300C8—H80.9300
C4—C51.400 (2)C9—S11.7344 (15)
C4—H40.9300C10—C7i1.5120 (18)
C5—C91.401 (2)C10—H181.022 (18)
C2—C1—C9120.69 (16)O1—C6—C5119.75 (14)
C2—C1—H1119.7C7—C6—C5119.50 (12)
C9—C1—H1119.7C8—C7—C6123.18 (13)
C1—C2—C3120.35 (16)C8—C7—C10120.42 (12)
C1—C2—H2119.8C6—C7—C10116.40 (11)
C3—C2—H2119.8C7—C8—S1127.52 (12)
C4—C3—C2119.60 (15)C7—C8—H8116.2
C4—C3—H3120.2S1—C8—H8116.2
C2—C3—H3120.2C5—C9—C1119.64 (15)
C3—C4—C5121.49 (15)C5—C9—S1123.71 (12)
C3—C4—H4119.3C1—C9—S1116.64 (12)
C5—C4—H4119.3C7—C10—C7i113.66 (17)
C4—C5—C9118.16 (14)C7—C10—H18111.2 (10)
C4—C5—C6118.40 (13)C7i—C10—H18106.9 (10)
C9—C5—C6123.43 (14)C8—S1—C9102.54 (7)
O1—C6—C7120.75 (14)
C9—C1—C2—C3−0.4 (3)C6—C7—C8—S10.0 (2)
C1—C2—C3—C41.8 (3)C10—C7—C8—S1179.14 (11)
C2—C3—C4—C5−0.9 (2)C4—C5—C9—C12.8 (2)
C3—C4—C5—C9−1.4 (2)C6—C5—C9—C1−176.99 (12)
C3—C4—C5—C6178.43 (13)C4—C5—C9—S1−176.06 (10)
C4—C5—C6—O1−3.8 (2)C6—C5—C9—S14.2 (2)
C9—C5—C6—O1175.94 (13)C2—C1—C9—C5−2.0 (2)
C4—C5—C6—C7175.98 (12)C2—C1—C9—S1176.96 (13)
C9—C5—C6—C7−4.2 (2)C8—C7—C10—C7i93.05 (13)
O1—C6—C7—C8−178.10 (14)C6—C7—C10—C7i−87.80 (11)
C5—C6—C7—C82.1 (2)C7—C8—S1—C9−0.25 (16)
O1—C6—C7—C102.8 (2)C5—C9—S1—C8−1.80 (14)
C5—C6—C7—C10−177.05 (12)C1—C9—S1—C8179.31 (11)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Methyl 7-chloro-2-ethyl-sulfanyl-6-fluoro-4-oxo-4H-thio-chromene-3-carboxyl-ate.

Authors:  Yang Li; Tao Xiao; Dong-Liang Liu; Guang-Yan Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-27

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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