Literature DB >> 23476511

cis-Chlorido(ethyl-amine)-bis-(propane-1,3-diamine)-cobalt(III) dichloride.

Velusamy Maheshwaran1, Viswanathan Thiruselvam, Munisamy Manjunathan, Krishnamoorthy Anbalagan, Mondikalipudur Nanjappa Gounder Ponnuswamy.   

Abstract

In the title compound, [CoCl(C2H7N)(C3H10N2)2]Cl2, the Co(III) ion has a distorted octa-hedral coordination environment and is surrounded by four N atoms in the equatorial plane, with the other N and Cl atoms occupying the axial positions. The crystal packing is stabilized by N-H⋯Cl hydrogen bonds, forming a layered arrangement parallel to (1-10).

Entities:  

Year:  2013        PMID: 23476511      PMCID: PMC3588535          DOI: 10.1107/S1600536813004650

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For supramolecular structures, see: Desiraju (1995 ▶); Khlobystov et al. (2001 ▶); Lehn (1995 ▶); Seo et al. (2000 ▶). For CoIII complexes, see: Chang et al. (2010 ▶). For related and comparable structures, see: Anbalagan et al. (2009 ▶); Lee et al. (2007 ▶); Ramesh et al. (2008 ▶); Ravichandran et al. (2009 ▶). For the preparation of (1,3-diamino­propane)­cobalt(III), see: Bailar & Work (1946 ▶).

Experimental

Crystal data

[CoCl(C2H7N)(C3H10N2)2]Cl2 M = 358.63 Triclinic, a = 7.8847 (4) Å b = 8.0627 (4) Å c = 12.6526 (5) Å α = 102.780 (3)° β = 99.936 (4)° γ = 92.580 (4)° V = 769.76 (6) Å3 Z = 2 Mo Kα radiation μ = 1.62 mm−1 T = 293 K 0.45 × 0.35 × 0.35 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.600, T max = 1.000 4965 measured reflections 2711 independent reflections 2299 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.060 S = 0.99 2711 reflections 194 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.35 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813004650/bt6888sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004650/bt6888Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CoCl(C2H7N)(C3H10N2)2]Cl2Z = 2
Mr = 358.63F(000) = 376
Triclinic, P1Dx = 1.547 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.8847 (4) ÅCell parameters from 2784 reflections
b = 8.0627 (4) Åθ = 3.4–29.0°
c = 12.6526 (5) ŵ = 1.62 mm1
α = 102.780 (3)°T = 293 K
β = 99.936 (4)°Block, yellow
γ = 92.580 (4)°0.45 × 0.35 × 0.35 mm
V = 769.76 (6) Å3
Oxford Diffraction Xcalibur Eos diffractometer2711 independent reflections
Radiation source: fine-focus sealed tube2299 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.018
ω scansθmax = 25.0°, θmin = 2.8°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)h = −9→9
Tmin = 0.600, Tmax = 1.000k = −9→9
4965 measured reflectionsl = −15→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.060H atoms treated by a mixture of independent and constrained refinement
S = 0.99w = 1/[σ2(Fo2) + (0.036P)2] where P = (Fo2 + 2Fc2)/3
2711 reflections(Δ/σ)max = 0.001
194 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7176 (3)0.6154 (3)0.98937 (17)0.0278 (5)
H1A0.77050.61461.06440.033*
H1B0.62870.52100.96320.033*
C20.6360 (3)0.7792 (3)0.98931 (16)0.0289 (5)
H2A0.72650.87171.00560.035*
H2B0.56910.80051.04770.035*
C30.5193 (3)0.7803 (3)0.88121 (16)0.0253 (5)
H3A0.43080.68580.86370.030*
H3B0.46220.88530.88960.030*
C41.0645 (3)0.9053 (3)0.74479 (16)0.0364 (6)
H4A1.16070.83880.72950.044*
H4B1.11121.02090.78200.044*
C50.9486 (4)0.9081 (3)0.63747 (19)0.0460 (7)
H5A0.84560.96300.65260.055*
H5B1.00820.97440.59750.055*
C60.8976 (3)0.7309 (3)0.56745 (17)0.0359 (6)
H6A0.84940.73730.49270.043*
H6B0.99960.66830.56500.043*
C70.4777 (3)0.3755 (3)0.7108 (2)0.0333 (5)
H7A0.42070.43160.65570.040*
H7B0.44830.42890.78110.040*
C80.4119 (3)0.1879 (3)0.6799 (2)0.0432 (7)
H8A0.28880.17760.67500.065*
H8B0.46560.13260.73530.065*
H8C0.43960.13490.61000.065*
N10.8505 (2)0.5908 (2)0.91895 (14)0.0205 (4)
N20.6139 (2)0.7664 (2)0.78807 (14)0.0202 (4)
N30.9726 (3)0.8316 (2)0.81887 (14)0.0210 (4)
N40.7690 (3)0.6375 (3)0.61050 (14)0.0223 (4)
N50.6662 (2)0.3992 (2)0.71863 (16)0.0222 (4)
Cl11.03872 (7)0.47044 (7)0.74016 (4)0.03006 (14)
Cl20.79985 (7)0.17837 (6)0.92229 (4)0.02905 (14)
Cl30.36383 (7)0.73553 (7)0.55285 (4)0.03125 (14)
Co10.80944 (3)0.62246 (3)0.766006 (19)0.01506 (9)
H2C0.543 (3)0.741 (3)0.7294 (17)0.024 (6)*
H3C0.926 (3)0.908 (3)0.8502 (17)0.020 (7)*
H3D1.052 (3)0.797 (3)0.8632 (17)0.022 (6)*
H4D0.685 (3)0.678 (3)0.5978 (17)0.019 (7)*
H1C0.882 (3)0.490 (3)0.9103 (16)0.020 (6)*
H4C0.756 (3)0.532 (3)0.5693 (16)0.020 (6)*
H2D0.652 (3)0.867 (3)0.7894 (17)0.030 (7)*
H5D0.693 (3)0.360 (3)0.659 (2)0.037 (7)*
H1D0.937 (3)0.652 (3)0.9535 (17)0.024 (6)*
H5C0.717 (3)0.339 (3)0.763 (2)0.042 (8)*
U11U22U33U12U13U23
C10.0319 (13)0.0330 (12)0.0235 (11)0.0038 (10)0.0115 (10)0.0120 (10)
C20.0376 (14)0.0307 (12)0.0203 (11)0.0054 (10)0.0138 (10)0.0030 (9)
C30.0241 (12)0.0242 (11)0.0291 (11)0.0077 (9)0.0117 (9)0.0033 (9)
C40.0341 (14)0.0469 (15)0.0264 (12)−0.0202 (12)0.0066 (11)0.0086 (11)
C50.0562 (17)0.0496 (16)0.0346 (13)−0.0224 (14)0.0048 (12)0.0233 (12)
C60.0319 (13)0.0576 (16)0.0186 (11)−0.0099 (12)0.0059 (10)0.0113 (11)
C70.0252 (12)0.0287 (12)0.0428 (13)−0.0039 (10)0.0049 (11)0.0037 (10)
C80.0386 (15)0.0320 (14)0.0556 (16)−0.0137 (11)0.0004 (13)0.0130 (12)
N10.0189 (10)0.0188 (10)0.0230 (9)0.0011 (8)0.0022 (8)0.0047 (8)
N20.0198 (10)0.0212 (10)0.0184 (9)0.0030 (8)0.0005 (8)0.0039 (8)
N30.0210 (10)0.0211 (10)0.0206 (9)−0.0018 (8)0.0032 (8)0.0051 (8)
N40.0196 (11)0.0259 (11)0.0188 (9)−0.0004 (9)0.0013 (8)0.0021 (8)
N50.0224 (10)0.0205 (9)0.0213 (10)−0.0017 (8)0.0027 (8)0.0016 (8)
Cl10.0230 (3)0.0349 (3)0.0332 (3)0.0107 (2)0.0084 (2)0.0057 (2)
Cl20.0321 (3)0.0204 (3)0.0321 (3)−0.0007 (2)0.0000 (2)0.0061 (2)
Cl30.0277 (3)0.0351 (3)0.0248 (3)0.0028 (2)0.0000 (2)−0.0022 (2)
Co10.01382 (15)0.01541 (15)0.01497 (15)0.00020 (10)0.00225 (10)0.00205 (10)
C1—N11.481 (3)C7—H7A0.9700
C1—C21.495 (3)C7—H7B0.9700
C1—H1A0.9700C8—H8A0.9600
C1—H1B0.9700C8—H8B0.9600
C2—C31.513 (3)C8—H8C0.9600
C2—H2A0.9700N1—Co11.9811 (17)
C2—H2B0.9700N1—H1C0.85 (2)
C3—N21.486 (2)N1—H1D0.82 (2)
C3—H3A0.9700N2—Co11.9921 (18)
C3—H3B0.9700N2—H2C0.83 (2)
C4—N31.483 (2)N2—H2D0.84 (2)
C4—C51.506 (3)N3—Co11.9887 (17)
C4—H4A0.9700N3—H3C0.79 (2)
C4—H4B0.9700N3—H3D0.87 (2)
C5—C61.502 (3)N4—Co11.9698 (18)
C5—H5A0.9700N4—H4D0.76 (2)
C5—H5B0.9700N4—H4C0.88 (2)
C6—N41.482 (3)N5—Co11.9953 (16)
C6—H6A0.9700N5—H5D0.82 (2)
C6—H6B0.9700N5—H5C0.88 (3)
C7—N51.474 (3)Cl1—Co12.2591 (6)
C7—C81.519 (3)
N1—C1—C2112.37 (17)H8B—C8—H8C109.5
N1—C1—H1A109.1C1—N1—Co1122.70 (14)
C2—C1—H1A109.1C1—N1—H1C111.0 (14)
N1—C1—H1B109.1Co1—N1—H1C102.2 (13)
C2—C1—H1B109.1C1—N1—H1D106.7 (15)
H1A—C1—H1B107.9Co1—N1—H1D108.1 (14)
C1—C2—C3113.66 (17)H1C—N1—H1D105 (2)
C1—C2—H2A108.8C3—N2—Co1124.93 (14)
C3—C2—H2A108.8C3—N2—H2C108.5 (15)
C1—C2—H2B108.8Co1—N2—H2C106.5 (15)
C3—C2—H2B108.8C3—N2—H2D106.4 (15)
H2A—C2—H2B107.7Co1—N2—H2D105.9 (16)
N2—C3—C2112.96 (17)H2C—N2—H2D102 (2)
N2—C3—H3A109.0C4—N3—Co1122.95 (13)
C2—C3—H3A109.0C4—N3—H3C105.6 (15)
N2—C3—H3B109.0Co1—N3—H3C109.9 (15)
C2—C3—H3B109.0C4—N3—H3D105.5 (14)
H3A—C3—H3B107.8Co1—N3—H3D100.6 (14)
N3—C4—C5112.45 (18)H3C—N3—H3D112 (2)
N3—C4—H4A109.1C6—N4—Co1120.95 (14)
C5—C4—H4A109.1C6—N4—H4D105.3 (16)
N3—C4—H4B109.1Co1—N4—H4D109.1 (16)
C5—C4—H4B109.1C6—N4—H4C105.5 (13)
H4A—C4—H4B107.8Co1—N4—H4C107.6 (13)
C6—C5—C4111.3 (2)H4D—N4—H4C108 (2)
C6—C5—H5A109.4C7—N5—Co1125.65 (15)
C4—C5—H5A109.4C7—N5—H5D110.9 (17)
C6—C5—H5B109.4Co1—N5—H5D100.9 (16)
C4—C5—H5B109.4C7—N5—H5C109.0 (16)
H5A—C5—H5B108.0Co1—N5—H5C103.4 (16)
N4—C6—C5111.91 (19)H5D—N5—H5C105 (2)
N4—C6—H6A109.2N4—Co1—N1176.20 (8)
C5—C6—H6A109.2N4—Co1—N394.63 (7)
N4—C6—H6B109.2N1—Co1—N388.27 (8)
C5—C6—H6B109.2N4—Co1—N288.57 (8)
H6A—C6—H6B107.9N1—Co1—N293.94 (7)
N5—C7—C8111.9 (2)N3—Co1—N289.27 (9)
N5—C7—H7A109.2N4—Co1—N588.27 (8)
C8—C7—H7A109.2N1—Co1—N588.62 (8)
N5—C7—H7B109.2N3—Co1—N5173.98 (9)
C8—C7—H7B109.2N2—Co1—N596.09 (8)
H7A—C7—H7B107.9N4—Co1—Cl190.49 (7)
C7—C8—H8A109.5N1—Co1—Cl187.13 (6)
C7—C8—H8B109.5N3—Co1—Cl188.21 (7)
H8A—C8—H8B109.5N2—Co1—Cl1177.23 (6)
C7—C8—H8C109.5N5—Co1—Cl186.49 (6)
H8A—C8—H8C109.5
N1—C1—C2—C370.5 (2)C1—N1—Co1—N5−75.46 (17)
C1—C2—C3—N2−64.4 (2)C1—N1—Co1—Cl1−162.02 (16)
N3—C4—C5—C6−68.7 (3)C4—N3—Co1—N4−20.0 (2)
C4—C5—C6—N473.7 (3)C4—N3—Co1—N1157.5 (2)
C2—C1—N1—Co1−48.3 (2)C4—N3—Co1—N2−108.52 (19)
C2—C3—N2—Co137.7 (2)C4—N3—Co1—Cl170.34 (19)
C5—C4—N3—Co143.3 (3)C3—N2—Co1—N4161.39 (17)
C5—C6—N4—Co1−51.5 (3)C3—N2—Co1—N1−15.75 (17)
C8—C7—N5—Co1−175.91 (15)C3—N2—Co1—N3−103.96 (17)
C6—N4—Co1—N323.7 (2)C3—N2—Co1—N573.28 (17)
C6—N4—Co1—N2112.81 (19)C7—N5—Co1—N4−89.73 (19)
C6—N4—Co1—N5−151.1 (2)C7—N5—Co1—N192.47 (19)
C6—N4—Co1—Cl1−64.58 (19)C7—N5—Co1—N2−1.35 (19)
C1—N1—Co1—N3109.69 (17)C7—N5—Co1—Cl1179.67 (18)
C1—N1—Co1—N220.54 (17)
D—H···AD—HH···AD···AD—H···A
N2—H2D···Cl2i0.84 (2)2.77 (2)3.5033 (19)145.6 (18)
N3—H3C···Cl2i0.79 (2)2.49 (2)3.275 (2)168 (2)
N1—H1D···Cl2ii0.82 (2)2.52 (2)3.3278 (19)173.2 (18)
N3—H3D···Cl2ii0.87 (2)2.72 (2)3.472 (2)145.6 (18)
N4—H4C···Cl3iii0.88 (2)2.40 (2)3.261 (2)163.7 (19)
N5—H5D···Cl3iii0.82 (2)2.57 (2)3.329 (2)154 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2D⋯Cl2i 0.84 (2)2.77 (2)3.5033 (19)145.6 (18)
N3—H3C⋯Cl2i 0.79 (2)2.49 (2)3.275 (2)168 (2)
N1—H1D⋯Cl2ii 0.82 (2)2.52 (2)3.3278 (19)173.2 (18)
N3—H3D⋯Cl2ii 0.87 (2)2.72 (2)3.472 (2)145.6 (18)
N4—H4C⋯Cl3iii 0.88 (2)2.40 (2)3.261 (2)163.7 (19)
N5—H5D⋯Cl3iii 0.82 (2)2.57 (2)3.329 (2)154 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A homochiral metal-organic porous material for enantioselective separation and catalysis

Authors: 
Journal:  Nature       Date:  2000-04-27       Impact factor: 49.962

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Dichlorido(dimethyl-glyoximato-κN,N')(dimethyl-glyoxime-κN,N')cobalt(III).

Authors:  P Ramesh; A Subbiahpandi; P Jothi; C Revathi; A Dayalan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-04

4.  Chloridobis(ethyl-enediamine-κN,N')(n-pentyl-amine-κN)cobalt(III) dichloride monhydrate.

Authors:  K Anbalagan; M Tamilselvan; S Nirmala; L Sudha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-27

5.  (Benzyl-amine)chloridobis(ethane-1,2-diamine)cobalt(III) dichloride hemihydrate.

Authors:  K Ravichandran; P Ramesh; M Tamilselvan; K Anbalagan; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-05

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.