Literature DB >> 21582753

Chloridobis(ethyl-enediamine-κN,N')(n-pentyl-amine-κN)cobalt(III) dichloride monhydrate.

K Anbalagan, M Tamilselvan, S Nirmala, L Sudha.   

Abstract

The title complex, [CoCl(C(5)H(13)N)(C(2)H(8)N(2))(2)]Cl(2)·H(2)O, comprises one chloridobis(ethyl-enediamine)(n-pentyl-amine)cobalt(III) cation, two chloride counter-anions and a water mol-ecule. The Co(III) atom of the complex is hexa-coordinated by five N and one Cl atoms. The five N atoms are from two chelating ethyl-enediamine and one n-pentyl-amine ligands. Neighbouring cations and anions are connected by N-H⋯Cl and N-H⋯O hydrogen bonds to each other and also to the water mol-ecule.

Entities:  

Year:  2009        PMID: 21582753      PMCID: PMC2969482          DOI: 10.1107/S1600536809022764

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the potential applications of metal–chelate complexes, see: Tweedy (1964 ▶); Kralova et al. (2004 ▶); Parekh et al. (2005 ▶); Rajevel et al. (2008 ▶). For cobalt(III) complexes, see: Bailer & Clapp (1945 ▶); Bailer & Rollinson (1946 ▶). For a related structure, see: Ou et al. (2007 ▶).

Experimental

Crystal data

[CoCl(C5H13N)(C2H8N2)2]Cl2·H2O M = 390.67 Monoclinic, a = 10.5214 (3) Å b = 7.2294 (2) Å c = 23.6225 (6) Å β = 96.117 (2)° V = 1786.58 (8) Å3 Z = 4 Mo Kα radiation μ = 1.41 mm−1 T = 293 K 0.25 × 0.20 × 0.15 mm

Data collection

Bruker Kappa-APEX2 CCD diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.719, T max = 0.816 23262 measured reflections 5510 independent reflections 4506 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.090 S = 1.10 5510 reflections 181 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.52 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809022764/bq2142sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022764/bq2142Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CoCl(C5H13N)(C2H8N2)2]Cl2·H2OF(000) = 824
Mr = 390.67Dx = 1.452 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 8809 reflections
a = 10.5214 (3) Åθ = 2.9–30.6°
b = 7.2294 (2) ŵ = 1.41 mm1
c = 23.6225 (6) ÅT = 293 K
β = 96.117 (2)°Prismatic, orange
V = 1786.58 (8) Å30.25 × 0.20 × 0.15 mm
Z = 4
Bruker Kappa-APEX2 CCD diffractometer5510 independent reflections
Radiation source: fine-focus sealed tube4506 reflections with I > 2σ(I)
graphiteRint = 0.029
ω and φ scansθmax = 30.7°, θmin = 1.7°
Absorption correction: multi-scan (Blessing, 1995)h = −15→15
Tmin = 0.719, Tmax = 0.816k = −8→10
23262 measured reflectionsl = −33→33
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.090w = 1/[σ2(Fo2) + (0.0497P)2 + 0.0821P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max = 0.006
5510 reflectionsΔρmax = 0.52 e Å3
181 parametersΔρmin = −0.35 e Å3
3 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0019 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6942 (2)0.3891 (2)0.95347 (8)0.0391 (4)
H1A0.63170.47500.96570.047*
H1B0.76750.45920.94390.047*
C20.73406 (18)0.2535 (2)1.00007 (8)0.0352 (4)
H2A0.78460.31451.03140.042*
H2B0.65970.19821.01430.042*
C30.95703 (17)0.0374 (3)0.84080 (8)0.0387 (4)
H3A1.04000.09130.83680.046*
H3B0.9209−0.00740.80380.046*
C40.96996 (17)−0.1182 (3)0.88299 (8)0.0364 (4)
H4A1.0107−0.22370.86700.044*
H4B1.0220−0.07980.91730.044*
C50.52205 (16)0.0781 (2)0.80180 (8)0.0328 (4)
H5A0.53490.20920.79570.039*
H5B0.46560.06530.83150.039*
C60.45868 (16)−0.0068 (3)0.74740 (7)0.0337 (4)
H6A0.4451−0.13770.75350.040*
H6B0.51520.00530.71770.040*
C70.33189 (17)0.0838 (3)0.72777 (8)0.0384 (4)
H7A0.34530.21550.72340.046*
H7B0.27450.06730.75690.046*
C80.26886 (18)0.0065 (3)0.67194 (8)0.0393 (4)
H8A0.32790.01690.64330.047*
H8B0.2510−0.12380.67690.047*
C90.1464 (2)0.1043 (4)0.65112 (12)0.0659 (7)
H9A0.11080.05010.61580.099*
H9B0.16360.23290.64530.099*
H9C0.08670.09220.67890.099*
N10.63802 (13)0.28252 (18)0.90348 (6)0.0277 (3)
H1C0.64090.35010.87170.033*
H1D0.55560.25670.90720.033*
N20.81072 (13)0.11089 (18)0.97448 (5)0.0262 (3)
H2C0.81440.00810.99610.031*
H2D0.89100.15250.97310.031*
N30.87124 (13)0.1775 (2)0.86270 (6)0.0304 (3)
H3C0.83780.25010.83390.036*
H3D0.91610.24950.88870.036*
N40.84066 (13)−0.16872 (19)0.89632 (6)0.0287 (3)
H4C0.8457−0.22490.93050.034*
H4D0.8052−0.24850.87000.034*
N50.64631 (13)−0.0082 (2)0.82114 (6)0.0280 (3)
H5C0.70050.02010.79540.034*
H5D0.6350−0.13160.81970.034*
O10.3655 (2)0.2049 (5)0.92521 (12)0.1255 (12)
Cl10.58524 (4)−0.11512 (6)0.935779 (18)0.03265 (10)
Cl21.09085 (4)0.29130 (6)0.96604 (2)0.03712 (11)
Cl30.71601 (4)0.54255 (6)0.799916 (18)0.03417 (10)
Co10.733516 (18)0.05224 (3)0.897435 (8)0.02096 (7)
H1E0.2883 (17)0.237 (6)0.9277 (18)0.17 (2)*
H1F0.394 (3)0.137 (4)0.9526 (11)0.112 (13)*
U11U22U33U12U13U23
C10.0500 (11)0.0276 (8)0.0377 (10)0.0041 (7)−0.0040 (8)−0.0063 (7)
C20.0430 (10)0.0363 (9)0.0258 (8)0.0007 (7)0.0007 (7)−0.0091 (7)
C30.0290 (8)0.0591 (12)0.0287 (9)0.0046 (8)0.0069 (7)−0.0004 (8)
C40.0280 (8)0.0435 (10)0.0368 (10)0.0095 (7)−0.0005 (7)−0.0062 (8)
C50.0286 (8)0.0373 (9)0.0305 (9)0.0047 (6)−0.0068 (6)−0.0044 (7)
C60.0306 (8)0.0408 (9)0.0279 (9)0.0023 (7)−0.0056 (6)−0.0024 (7)
C70.0321 (9)0.0480 (10)0.0328 (10)0.0057 (7)−0.0068 (7)−0.0062 (8)
C80.0350 (9)0.0469 (10)0.0331 (10)0.0021 (8)−0.0097 (7)−0.0036 (8)
C90.0468 (13)0.0812 (17)0.0632 (16)0.0152 (12)−0.0241 (11)−0.0116 (13)
N10.0287 (7)0.0261 (6)0.0278 (7)0.0018 (5)0.0005 (5)0.0014 (5)
N20.0274 (6)0.0286 (6)0.0218 (6)−0.0027 (5)−0.0017 (5)−0.0002 (5)
N30.0264 (6)0.0369 (7)0.0274 (7)−0.0017 (5)0.0017 (5)0.0070 (6)
N40.0313 (7)0.0283 (6)0.0250 (7)0.0035 (5)−0.0037 (5)−0.0030 (5)
N50.0276 (6)0.0345 (7)0.0208 (6)0.0030 (5)−0.0032 (5)−0.0009 (5)
O10.0775 (15)0.188 (3)0.121 (2)0.0730 (17)0.0573 (15)0.104 (2)
Cl10.0302 (2)0.0344 (2)0.0332 (2)−0.00734 (15)0.00280 (15)0.00406 (16)
Cl20.0307 (2)0.0406 (2)0.0387 (2)−0.00616 (16)−0.00247 (16)0.00198 (18)
Cl30.0438 (2)0.0327 (2)0.0259 (2)−0.00019 (16)0.00328 (16)−0.00105 (15)
Co10.02095 (11)0.02308 (11)0.01830 (11)−0.00082 (7)−0.00051 (7)0.00072 (7)
C1—N11.479 (2)C8—C91.505 (3)
C1—C21.501 (3)C8—H8A0.9700
C1—H1A0.9700C8—H8B0.9700
C1—H1B0.9700C9—H9A0.9600
C2—N21.477 (2)C9—H9B0.9600
C2—H2A0.9700C9—H9C0.9600
C2—H2B0.9700N1—Co11.9575 (13)
C3—N31.485 (2)N1—H1C0.9000
C3—C41.500 (3)N1—H1D0.9000
C3—H3A0.9700N2—Co11.9588 (13)
C3—H3B0.9700N2—H2C0.9000
C4—N41.475 (2)N2—H2D0.9000
C4—H4A0.9700N3—Co11.9611 (13)
C4—H4B0.9700N3—H3C0.9000
C5—N51.477 (2)N3—H3D0.9000
C5—C61.513 (2)N4—Co11.9569 (13)
C5—H5A0.9700N4—H4C0.9000
C5—H5B0.9700N4—H4D0.9000
C6—C71.514 (2)N5—Co11.9822 (13)
C6—H6A0.9700N5—H5C0.9000
C6—H6B0.9700N5—H5D0.9000
C7—C81.518 (2)O1—H1E0.852 (10)
C7—H7A0.9700O1—H1F0.841 (10)
C7—H7B0.9700Cl1—Co12.2403 (4)
N1—C1—C2107.56 (14)H9A—C9—H9B109.5
N1—C1—H1A110.2C8—C9—H9C109.5
C2—C1—H1A110.2H9A—C9—H9C109.5
N1—C1—H1B110.2H9B—C9—H9C109.5
C2—C1—H1B110.2C1—N1—Co1109.70 (11)
H1A—C1—H1B108.5C1—N1—H1C109.7
N2—C2—C1106.15 (14)Co1—N1—H1C109.7
N2—C2—H2A110.5C1—N1—H1D109.7
C1—C2—H2A110.5Co1—N1—H1D109.7
N2—C2—H2B110.5H1C—N1—H1D108.2
C1—C2—H2B110.5C2—N2—Co1109.93 (10)
H2A—C2—H2B108.7C2—N2—H2C109.7
N3—C3—C4107.18 (14)Co1—N2—H2C109.7
N3—C3—H3A110.3C2—N2—H2D109.7
C4—C3—H3A110.3Co1—N2—H2D109.7
N3—C3—H3B110.3H2C—N2—H2D108.2
C4—C3—H3B110.3C3—N3—Co1109.55 (11)
H3A—C3—H3B108.5C3—N3—H3C109.8
N4—C4—C3107.89 (14)Co1—N3—H3C109.8
N4—C4—H4A110.1C3—N3—H3D109.8
C3—C4—H4A110.1Co1—N3—H3D109.8
N4—C4—H4B110.1H3C—N3—H3D108.2
C3—C4—H4B110.1C4—N4—Co1110.28 (11)
H4A—C4—H4B108.4C4—N4—H4C109.6
N5—C5—C6112.74 (14)Co1—N4—H4C109.6
N5—C5—H5A109.0C4—N4—H4D109.6
C6—C5—H5A109.0Co1—N4—H4D109.6
N5—C5—H5B109.0H4C—N4—H4D108.1
C6—C5—H5B109.0C5—N5—Co1119.79 (10)
H5A—C5—H5B107.8C5—N5—H5C107.4
C5—C6—C7112.26 (15)Co1—N5—H5C107.4
C5—C6—H6A109.2C5—N5—H5D107.4
C7—C6—H6A109.2Co1—N5—H5D107.4
C5—C6—H6B109.2H5C—N5—H5D106.9
C7—C6—H6B109.2H1E—O1—H1F111.3 (17)
H6A—C6—H6B107.9N4—Co1—N1174.92 (6)
C6—C7—C8113.34 (15)N4—Co1—N290.39 (6)
C6—C7—H7A108.9N1—Co1—N285.03 (6)
C8—C7—H7A108.9N4—Co1—N385.34 (6)
C6—C7—H7B108.9N1—Co1—N392.63 (6)
C8—C7—H7B108.9N2—Co1—N392.13 (6)
H7A—C7—H7B107.7N4—Co1—N591.10 (6)
C9—C8—C7112.99 (18)N1—Co1—N593.59 (6)
C9—C8—H8A109.0N2—Co1—N5176.89 (6)
C7—C8—H8A109.0N3—Co1—N590.71 (6)
C9—C8—H8B109.0N4—Co1—Cl189.52 (4)
C7—C8—H8B109.0N1—Co1—Cl192.57 (4)
H8A—C8—H8B107.8N2—Co1—Cl188.79 (4)
C8—C9—H9A109.5N3—Co1—Cl1174.78 (4)
C8—C9—H9B109.5N5—Co1—Cl188.49 (4)
N1—C1—C2—N250.28 (19)C1—N1—Co1—N3−79.47 (12)
N3—C3—C4—N448.28 (19)C1—N1—Co1—N5−170.35 (12)
N5—C5—C6—C7−179.58 (16)C1—N1—Co1—Cl1101.00 (11)
C5—C6—C7—C8177.60 (17)C2—N2—Co1—N4−166.25 (11)
C6—C7—C8—C9−176.9 (2)C2—N2—Co1—N115.94 (11)
C2—C1—N1—Co1−37.75 (17)C2—N2—Co1—N3108.40 (11)
C1—C2—N2—Co1−40.09 (16)C2—N2—Co1—Cl1−76.74 (10)
C4—C3—N3—Co1−38.51 (17)C3—N3—Co1—N415.27 (11)
C3—C4—N4—Co1−36.06 (16)C3—N3—Co1—N1−169.40 (11)
C6—C5—N5—Co1−170.27 (12)C3—N3—Co1—N2105.48 (11)
C4—N4—Co1—N2−80.28 (11)C3—N3—Co1—N5−75.78 (12)
C4—N4—Co1—N311.82 (11)C5—N5—Co1—N4161.69 (13)
C4—N4—Co1—N5102.45 (11)C5—N5—Co1—N1−20.28 (13)
C4—N4—Co1—Cl1−169.07 (11)C5—N5—Co1—N3−112.95 (13)
C1—N1—Co1—N212.44 (12)C5—N5—Co1—Cl172.21 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1C···Cl30.902.393.2589 (14)162
N1—H1D···O10.902.123.018 (3)174
N3—H3C···Cl30.902.563.3641 (14)150
N4—H4D···Cl3i0.902.363.2597 (14)179
N4—H4C···Cl2ii0.902.513.3731 (15)161
N5—H5C···Cl3iii0.902.513.3605 (15)158
N5—H5D···Cl3i0.902.563.3784 (15)151
C3—H3B···Cl3iii0.972.733.616 (2)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1C⋯Cl30.902.393.2589 (14)162
N1—H1D⋯O10.902.123.018 (3)174
N3—H3C⋯Cl30.902.563.3641 (14)150
N4—H4D⋯Cl3i0.902.363.2597 (14)179
N4—H4C⋯Cl2ii0.902.513.3731 (15)161
N5—H5C⋯Cl3iii0.902.513.3605 (15)158
N5—H5D⋯Cl3i0.902.563.3784 (15)151

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  5 in total

1.  Chloridobis(ethane-1,2-diamine)(4-methyl-aniline)cobalt(III) dichloride monohydrate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28

2.  trans-Chloridobis-(ethane-1,2-di-amine-κ(2) N,N')(thio-cyanato-κN)cobalt(III) diammine-tetra-kis-(thio-cyanato-κN)cromate(III).

Authors:  Julia A Rusanova; Valentyna V Semenaka; Roman I Zubatyuk
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-26

3.  cis-Chlorido(methyl-amine)-bis-(propane-1,3-diamine)-cobalt(III) dichloride monohydrate.

Authors:  Velusamy Maheshwaran; Munisamy Manjunathan; Krishnamoorthy Anbalagan; Viswanathan Thiruselvam; Mondikalipudur Nanjappagounder Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-13

4.  cis-Chlorido(ethyl-amine)-bis-(propane-1,3-diamine)-cobalt(III) dichloride.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-23

5.  cis-Bromido(methyl-amine)-bis-(propane-1,3-di-amine)-cobalt(III) dibromide.

Authors:  P S Kannan; A S Ganeshraja; K Anbalagan; E Govindan; A Subbiahpandi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-12
  5 in total

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