Literature DB >> 23476478

rac-Ethyl 2-hy-droxy-2,7,7-trimethyl-4-(4-nitro-phen-yl)-5-oxo-3,4,5,6,7,8-hexa-hydro-2H-chromene-3-carboxyl-ate.

Abel M Maharramov1, Arif I Ismiev, Bahruz A Rashidov, Rizvan K Askerov, Konstantin A Potekhin.   

Abstract

The title mol-ecule, C21H25NO7, has four stereogenic centres and crystallized as a racemate. It consists of enanti-omeric pairs with the relative configuration rac-(1R*,2S*,3R*). The cyclo-hexenone ring adopts an envelope conformation; the dimethyl-substituted C atom lies 0.640 (1) Å out of the mean plane formed by the rest of the ring atoms (r.m.s. deviation = 0.016 Å). The oxacyclo-hexene ring adopts a half-chair conformation, the hy-droxy- and carboxyl-substituted C atoms lying -0.336 (1) and 0.419 (1) Å, respectively, out of the mean plane formed by the rest of the ring atoms (r.m.s. deviation = 0.002 Å). In the crystal, O-H⋯O hydrogen bonds link the mol-ecules into a chain along the c-axis direction.

Entities:  

Year:  2012        PMID: 23476478      PMCID: PMC3588292          DOI: 10.1107/S1600536812050581

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to 2H-chromenes and their derivatives, see: Cai (2008 ▶); Valenti et al. (1993 ▶); Hyana & Saimoto (1987 ▶); Tang et al. (2007 ▶). For their anti­cancer activity, see: Afanti­tis et al. (2006 ▶); Cai (2007 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C21H25NO7 M = 403.42 Monoclinic, a = 10.4163 (8) Å b = 24.2608 (18) Å c = 8.0796 (6) Å β = 96.437 (2)° V = 2028.9 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1998 ▶) T min = 0.971, T max = 0.980 23423 measured reflections 5078 independent reflections 4084 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.118 S = 1.00 5078 reflections 266 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT-Plus (Bruker, 2005 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812050581/aa2078sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812050581/aa2078Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812050581/aa2078Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H25NO7F(000) = 856
Mr = 403.42Dx = 1.321 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6760 reflections
a = 10.4163 (8) Åθ = 2.7–28.5°
b = 24.2608 (18) ŵ = 0.10 mm1
c = 8.0796 (6) ÅT = 296 K
β = 96.437 (2)°Prism, yellow
V = 2028.9 (3) Å30.30 × 0.20 × 0.20 mm
Z = 4
Bruker APEXII CCD diffractometer5078 independent reflections
Radiation source: fine-focus sealed tube4084 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
φ and ω scansθmax = 28.4°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1998)h = −13→13
Tmin = 0.971, Tmax = 0.980k = −32→32
23423 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: difference Fourier map
wR(F2) = 0.118H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0521P)2 + 0.7463P] where P = (Fo2 + 2Fc2)/3
5078 reflections(Δ/σ)max = 0.001
266 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.06693 (9)0.68270 (4)0.29152 (11)0.0360 (2)
O2−0.04636 (10)0.74080 (4)0.10075 (13)0.0383 (2)
H2−0.080 (2)0.7620 (9)0.162 (3)0.061 (6)*
O3−0.17047 (10)0.67735 (4)−0.21204 (13)0.0427 (3)
O4−0.23488 (9)0.60735 (4)−0.06145 (12)0.0366 (2)
O50.23965 (18)0.44094 (6)−0.4474 (2)0.0829 (5)
O60.16430 (16)0.49162 (6)−0.65423 (17)0.0721 (4)
O70.35300 (11)0.66576 (5)−0.11760 (13)0.0508 (3)
N10.18908 (15)0.48317 (6)−0.5053 (2)0.0522 (4)
C1−0.04561 (12)0.68823 (6)0.16883 (16)0.0314 (3)
C2−0.03255 (12)0.64615 (5)0.03021 (15)0.0297 (3)
H2A−0.02440.60950.08120.036*
C30.08949 (12)0.65704 (5)−0.05552 (16)0.0303 (3)
H3A0.07580.6908−0.12180.036*
C40.20193 (13)0.66649 (6)0.07676 (16)0.0322 (3)
C50.33285 (14)0.66857 (6)0.02822 (18)0.0370 (3)
C60.44363 (14)0.67805 (8)0.1622 (2)0.0467 (4)
H6A0.46660.71680.16160.056*
H6B0.51760.65730.13350.056*
C70.41940 (14)0.66238 (7)0.33864 (19)0.0411 (3)
C80.29096 (13)0.68842 (7)0.37109 (18)0.0393 (3)
H8A0.26600.67400.47480.047*
H8B0.30280.72790.38420.047*
C90.18422 (12)0.67797 (5)0.23553 (17)0.0323 (3)
C10−0.15932 (14)0.67843 (7)0.26566 (19)0.0432 (3)
H10A−0.16090.70630.34980.065*
H10B−0.15140.64280.31740.065*
H10C−0.23790.68000.19140.065*
C11−0.15205 (12)0.64616 (5)−0.09602 (16)0.0310 (3)
C12−0.35486 (14)0.60395 (7)−0.17297 (19)0.0407 (3)
H12A−0.33630.6005−0.28750.049*
H12B−0.40620.6369−0.16340.049*
C13−0.42646 (19)0.55435 (8)−0.1231 (3)0.0638 (5)
H13A−0.50620.5509−0.19440.096*
H13B−0.44430.5583−0.00970.096*
H13C−0.37480.5220−0.13330.096*
C140.11142 (13)0.60989 (6)−0.17235 (16)0.0325 (3)
C150.08635 (14)0.61724 (6)−0.34299 (17)0.0371 (3)
H15A0.05400.6508−0.38470.044*
C160.10879 (15)0.57534 (6)−0.45185 (18)0.0410 (3)
H16A0.09150.5804−0.56630.049*
C170.15694 (14)0.52615 (6)−0.38837 (19)0.0396 (3)
C180.17904 (16)0.51659 (6)−0.2196 (2)0.0456 (4)
H18A0.20940.4826−0.17880.055*
C190.15505 (16)0.55868 (6)−0.11237 (18)0.0428 (3)
H19A0.16830.55270.00200.051*
C200.41427 (19)0.59983 (8)0.3586 (3)0.0623 (5)
H20A0.49560.58410.33800.093*
H20B0.34670.58500.28060.093*
H20C0.39730.59100.46990.093*
C210.52760 (16)0.68578 (9)0.4625 (2)0.0565 (5)
H21A0.60840.66940.44270.085*
H21B0.51010.67760.57400.085*
H21C0.53220.72500.44850.085*
U11U22U33U12U13U23
O10.0287 (5)0.0509 (6)0.0282 (4)0.0038 (4)0.0028 (4)−0.0004 (4)
O20.0428 (6)0.0338 (5)0.0386 (5)0.0051 (4)0.0056 (4)−0.0010 (4)
O30.0407 (6)0.0451 (6)0.0406 (5)−0.0048 (4)−0.0030 (4)0.0116 (4)
O40.0338 (5)0.0386 (5)0.0367 (5)−0.0063 (4)−0.0001 (4)0.0030 (4)
O50.1139 (14)0.0500 (8)0.0884 (11)0.0253 (8)0.0266 (10)−0.0098 (7)
O60.0927 (11)0.0727 (9)0.0532 (8)0.0037 (8)0.0182 (7)−0.0222 (7)
O70.0390 (6)0.0750 (8)0.0403 (6)0.0008 (5)0.0130 (5)−0.0018 (5)
N10.0546 (8)0.0424 (8)0.0626 (9)−0.0018 (6)0.0190 (7)−0.0137 (7)
C10.0268 (6)0.0373 (7)0.0303 (6)0.0010 (5)0.0037 (5)0.0006 (5)
C20.0287 (6)0.0310 (6)0.0296 (6)0.0016 (5)0.0035 (5)0.0019 (5)
C30.0291 (6)0.0326 (6)0.0293 (6)0.0035 (5)0.0043 (5)0.0014 (5)
C40.0277 (6)0.0348 (7)0.0341 (6)0.0019 (5)0.0036 (5)0.0006 (5)
C50.0322 (7)0.0394 (7)0.0399 (7)0.0011 (5)0.0065 (6)0.0009 (6)
C60.0292 (7)0.0652 (10)0.0461 (8)−0.0052 (7)0.0053 (6)−0.0018 (7)
C70.0297 (7)0.0498 (9)0.0429 (8)0.0030 (6)0.0002 (6)0.0019 (6)
C80.0324 (7)0.0495 (8)0.0349 (7)0.0022 (6)−0.0005 (5)−0.0021 (6)
C90.0277 (6)0.0341 (7)0.0348 (7)0.0029 (5)0.0027 (5)0.0024 (5)
C100.0341 (7)0.0583 (9)0.0389 (8)−0.0044 (6)0.0111 (6)−0.0066 (7)
C110.0301 (6)0.0311 (6)0.0322 (6)0.0009 (5)0.0050 (5)−0.0018 (5)
C120.0315 (7)0.0476 (8)0.0418 (7)−0.0025 (6)−0.0008 (6)−0.0028 (6)
C130.0486 (10)0.0582 (11)0.0821 (13)−0.0178 (8)−0.0033 (9)0.0004 (10)
C140.0294 (6)0.0362 (7)0.0321 (6)0.0027 (5)0.0047 (5)−0.0005 (5)
C150.0412 (7)0.0371 (7)0.0336 (7)0.0074 (6)0.0073 (6)0.0021 (5)
C160.0461 (8)0.0454 (8)0.0324 (7)0.0014 (6)0.0087 (6)−0.0019 (6)
C170.0379 (7)0.0371 (7)0.0453 (8)−0.0003 (6)0.0112 (6)−0.0077 (6)
C180.0509 (9)0.0348 (7)0.0509 (9)0.0091 (6)0.0041 (7)0.0015 (6)
C190.0517 (9)0.0407 (8)0.0349 (7)0.0074 (7)0.0001 (6)0.0028 (6)
C200.0519 (10)0.0541 (11)0.0790 (13)0.0110 (8)−0.0003 (9)0.0108 (9)
C210.0344 (8)0.0817 (13)0.0508 (9)0.0015 (8)−0.0066 (7)−0.0023 (9)
O1—C91.3544 (16)C8—C91.4924 (18)
O1—C11.4541 (15)C8—H8A0.9700
O2—C11.3885 (17)C8—H8B0.9700
O2—H20.82 (2)C10—H10A0.9600
O3—C111.2032 (16)C10—H10B0.9600
O4—C111.3278 (16)C10—H10C0.9600
O4—C121.4588 (17)C12—C131.494 (2)
O5—N11.221 (2)C12—H12A0.9700
O6—N11.219 (2)C12—H12B0.9700
O7—C51.2216 (17)C13—H13A0.9600
N1—C171.4706 (19)C13—H13B0.9600
C1—C101.5096 (19)C13—H13C0.9600
C1—C21.5328 (18)C14—C151.3857 (19)
C2—C111.5182 (18)C14—C191.391 (2)
C2—C31.5373 (18)C15—C161.381 (2)
C2—H2A0.9800C15—H15A0.9300
C3—C41.5119 (18)C16—C171.372 (2)
C3—C141.5166 (18)C16—H16A0.9300
C3—H3A0.9800C17—C181.377 (2)
C4—C91.3454 (19)C18—C191.380 (2)
C4—C51.4615 (19)C18—H18A0.9300
C5—C61.509 (2)C19—H19A0.9300
C6—C71.524 (2)C20—H20A0.9600
C6—H6A0.9700C20—H20B0.9600
C6—H6B0.9700C20—H20C0.9600
C7—C201.528 (2)C21—H21A0.9600
C7—C81.529 (2)C21—H21B0.9600
C7—C211.530 (2)C21—H21C0.9600
C9—O1—C1117.94 (10)C1—C10—H10A109.5
C1—O2—H2108.7 (15)C1—C10—H10B109.5
C11—O4—C12116.24 (11)H10A—C10—H10B109.5
O6—N1—O5123.61 (15)C1—C10—H10C109.5
O6—N1—C17118.46 (15)H10A—C10—H10C109.5
O5—N1—C17117.93 (15)H10B—C10—H10C109.5
O2—C1—O1108.85 (11)O3—C11—O4124.00 (12)
O2—C1—C10112.34 (12)O3—C11—C2124.80 (12)
O1—C1—C10104.57 (11)O4—C11—C2111.20 (11)
O2—C1—C2108.62 (10)O4—C12—C13107.34 (13)
O1—C1—C2107.81 (10)O4—C12—H12A110.2
C10—C1—C2114.38 (11)C13—C12—H12A110.2
C11—C2—C1110.94 (10)O4—C12—H12B110.2
C11—C2—C3110.76 (10)C13—C12—H12B110.2
C1—C2—C3111.12 (11)H12A—C12—H12B108.5
C11—C2—H2A108.0C12—C13—H13A109.5
C1—C2—H2A108.0C12—C13—H13B109.5
C3—C2—H2A108.0H13A—C13—H13B109.5
C4—C3—C14113.29 (11)C12—C13—H13C109.5
C4—C3—C2108.77 (10)H13A—C13—H13C109.5
C14—C3—C2109.91 (11)H13B—C13—H13C109.5
C4—C3—H3A108.2C15—C14—C19118.63 (13)
C14—C3—H3A108.2C15—C14—C3119.84 (12)
C2—C3—H3A108.2C19—C14—C3121.53 (12)
C9—C4—C5118.72 (12)C16—C15—C14120.83 (13)
C9—C4—C3121.82 (12)C16—C15—H15A119.6
C5—C4—C3119.19 (12)C14—C15—H15A119.6
O7—C5—C4121.55 (13)C17—C16—C15118.89 (13)
O7—C5—C6120.01 (13)C17—C16—H16A120.6
C4—C5—C6118.32 (12)C15—C16—H16A120.6
C5—C6—C7116.08 (13)C16—C17—C18122.03 (13)
C5—C6—H6A108.3C16—C17—N1118.47 (14)
C7—C6—H6A108.3C18—C17—N1119.48 (14)
C5—C6—H6B108.3C17—C18—C19118.37 (14)
C7—C6—H6B108.3C17—C18—H18A120.8
H6A—C6—H6B107.4C19—C18—H18A120.8
C6—C7—C20111.00 (15)C18—C19—C14121.16 (14)
C6—C7—C8107.29 (12)C18—C19—H19A119.4
C20—C7—C8110.53 (14)C14—C19—H19A119.4
C6—C7—C21109.40 (14)C7—C20—H20A109.5
C20—C7—C21109.35 (14)C7—C20—H20B109.5
C8—C7—C21109.22 (13)H20A—C20—H20B109.5
C9—C8—C7113.47 (12)C7—C20—H20C109.5
C9—C8—H8A108.9H20A—C20—H20C109.5
C7—C8—H8A108.9H20B—C20—H20C109.5
C9—C8—H8B108.9C7—C21—H21A109.5
C7—C8—H8B108.9C7—C21—H21B109.5
H8A—C8—H8B107.7H21A—C21—H21B109.5
C4—C9—O1124.14 (12)C7—C21—H21C109.5
C4—C9—C8124.36 (12)H21A—C21—H21C109.5
O1—C9—C8111.48 (11)H21B—C21—H21C109.5
C9—O1—C1—O2−73.27 (14)C5—C4—C9—C8−5.2 (2)
C9—O1—C1—C10166.48 (12)C3—C4—C9—C8−179.15 (13)
C9—O1—C1—C244.38 (15)C1—O1—C9—C4−14.56 (19)
O2—C1—C2—C11−66.83 (13)C1—O1—C9—C8164.06 (11)
O1—C1—C2—C11175.37 (10)C7—C8—C9—C4−24.3 (2)
C10—C1—C2—C1159.55 (15)C7—C8—C9—O1157.08 (12)
O2—C1—C2—C356.85 (13)C12—O4—C11—O3−0.54 (19)
O1—C1—C2—C3−60.94 (13)C12—O4—C11—C2179.02 (11)
C10—C1—C2—C3−176.77 (11)C1—C2—C11—O384.53 (16)
C11—C2—C3—C4170.27 (11)C3—C2—C11—O3−39.36 (18)
C1—C2—C3—C446.48 (14)C1—C2—C11—O4−95.03 (13)
C11—C2—C3—C14−65.16 (13)C3—C2—C11—O4141.08 (11)
C1—C2—C3—C14171.05 (10)C11—O4—C12—C13174.00 (14)
C14—C3—C4—C9−138.81 (13)C4—C3—C14—C15−131.87 (13)
C2—C3—C4—C9−16.27 (17)C2—C3—C14—C15106.22 (14)
C14—C3—C4—C547.28 (17)C4—C3—C14—C1948.91 (18)
C2—C3—C4—C5169.83 (12)C2—C3—C14—C19−73.00 (16)
C9—C4—C5—O7−170.20 (14)C19—C14—C15—C16−2.4 (2)
C3—C4—C5—O73.9 (2)C3—C14—C15—C16178.31 (13)
C9—C4—C5—C65.9 (2)C14—C15—C16—C17−0.2 (2)
C3—C4—C5—C6179.98 (13)C15—C16—C17—C182.5 (2)
O7—C5—C6—C7−160.47 (15)C15—C16—C17—N1−175.77 (14)
C4—C5—C6—C723.4 (2)O6—N1—C17—C16−4.4 (2)
C5—C6—C7—C2071.49 (18)O5—N1—C17—C16175.33 (16)
C5—C6—C7—C8−49.37 (19)O6—N1—C17—C18177.29 (16)
C5—C6—C7—C21−167.74 (15)O5—N1—C17—C18−2.9 (2)
C6—C7—C8—C948.98 (17)C16—C17—C18—C19−1.9 (2)
C20—C7—C8—C9−72.17 (17)N1—C17—C18—C19176.34 (14)
C21—C7—C8—C9167.47 (14)C17—C18—C19—C14−0.9 (2)
C5—C4—C9—O1173.22 (13)C15—C14—C19—C183.1 (2)
C3—C4—C9—O1−0.7 (2)C3—C14—C19—C18−177.72 (14)
D—H···AD—HH···AD···AD—H···A
O2—H2···O3i0.82 (2)2.08 (2)2.8881 (15)172 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2⋯O3i 0.82 (2)2.08 (2)2.8881 (15)172 (2)

Symmetry code: (i) .

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Review 5.  Small molecule vascular disrupting agents: potential new drugs for cancer treatment.

Authors:  Sui X Cai
Journal:  Recent Pat Anticancer Drug Discov       Date:  2007-01       Impact factor: 4.169

  5 in total

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