Literature DB >> 23476469

2,2,7,7-Tetra-methyl-1,2,3,4,5,6,7,8-octa-hydro-acridine-1,8-dione.

Sema Oztürk Yildirim1, Ray J Butcher, Rahime Simsek, Ahmed El-Khouly, Cihat Safak.   

Abstract

The whole molecule of the title compound, C17H21NO2, is generated by twofold rotational symmetry. The N atom and the C and H atoms in position 4 of the pyridine ring lie on the twofold axis. The cyclohexene ring has a sofa conformation with the CH2 C atom adjacent to the dimethyl-substituted C atom displaced by 0.5949 (16) Å from the mean plane of the other five C atoms. In the crystal, weak C-H⋯O inter-actions link the mol-ecules into chains parallel to the a axis. In addition, π-π stacking inter-actions [centroid-centroid distance = 3.8444 (7) Å] contribute to the stabilization of the crystal structure.

Entities:  

Year:  2012        PMID: 23476469      PMCID: PMC3588388          DOI: 10.1107/S1600536812048957

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to potassium channels and biological functions and physiological roles, see: Horiuchi et al. (2001 ▶); Crestanello et al. (2000 ▶). For biological properties of 1,4-dihydro­pyridines (DHP), see: Simşek et al. (2004 ▶); Fincan et al. (2012 ▶); Gündüz et al. (2009 ▶); Pyrko (2008 ▶); Li et al. (2010 ▶). For geometric analysis, see: Cremer & Pople (1975 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For similar structures, see: El-Khouly et al. (2012 ▶); Öztürk Yildirim et al. (2012 ▶, 2013 ▶); Gündüz et al. (2012 ▶).

Experimental

Crystal data

C17H21NO2 M = 271.35 Tetragonal, a = 9.99077 (19) Å c = 14.5063 (4) Å V = 1447.95 (6) Å3 Z = 4 Cu Kα radiation μ = 0.64 mm−1 T = 123 K 0.50 × 0.30 × 0.25 mm

Data collection

Agilent Xcalibur (Ruby, Gemini) diffractometer Absorption correction: multi-scan [CrysAlis RED (Agilent, 2011 ▶), based on expressions derived by Clark & Reid (1995 ▶)] T min = 0.740, T max = 0.856 3055 measured reflections 1452 independent reflections 1349 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.122 S = 1.09 1452 reflections 94 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812048957/mw2098sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812048957/mw2098Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812048957/mw2098Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H21NO2Dx = 1.245 Mg m3
Mr = 271.35Cu Kα radiation, λ = 1.54184 Å
Tetragonal, P4322Cell parameters from 1551 reflections
Hall symbol: P 4cw 2cθ = 3.0–75.1°
a = 9.99077 (19) ŵ = 0.64 mm1
c = 14.5063 (4) ÅT = 123 K
V = 1447.95 (6) Å3Block, colorless
Z = 40.50 × 0.30 × 0.25 mm
F(000) = 584
Agilent Xcalibur (Ruby, Gemini) diffractometer1452 independent reflections
Radiation source: Enhance (Cu) X-ray Source1349 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
Detector resolution: 10.5081 pixels mm-1θmax = 75.3°, θmin = 4.4°
ω scansh = −11→12
Absorption correction: multi-scan [CrysAlis RED (Agilent, 2011), based on expressions derived by Clark & Reid (1995)]k = −12→7
Tmin = 0.740, Tmax = 0.856l = −12→18
3055 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0749P)2 + 0.0669P] where P = (Fo2 + 2Fc2)/3
1452 reflections(Δ/σ)max < 0.001
94 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.24 e Å3
Experimental. Absorption correction: CrysAlis RED, (Agilent, 2011) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. (Clark & Reid, 1995).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.54930 (12)0.19920 (12)0.62530 (9)0.0345 (3)
N10.66208 (13)0.66208 (13)0.62500.0259 (4)
C10.69529 (15)0.53223 (15)0.61859 (10)0.0231 (3)
C20.84076 (15)0.49870 (18)0.60647 (12)0.0288 (4)
H2A0.89570.56490.64030.035*
H2B0.86430.50490.54030.035*
C30.87361 (17)0.35818 (18)0.64155 (11)0.0297 (4)
H3A0.86710.35790.70960.036*
H3B0.96740.33680.62510.036*
C40.78234 (16)0.24795 (17)0.60323 (11)0.0254 (4)
C50.63570 (16)0.28413 (16)0.61821 (11)0.0240 (3)
C60.59904 (15)0.42923 (15)0.62063 (10)0.0218 (3)
C70.46519 (15)0.46519 (15)0.62500.0223 (4)
H7A0.39800.39800.62500.027*
C80.79805 (17)0.23165 (17)0.49808 (12)0.0319 (4)
H8A0.73070.16850.47520.048*
H8B0.88770.19740.48420.048*
H8C0.78560.31860.46800.048*
C90.8130 (2)0.1153 (2)0.65133 (18)0.0458 (6)
H9A0.75590.04480.62570.069*
H9B0.79550.12420.71750.069*
H9C0.90720.09200.64160.069*
U11U22U33U12U13U23
O10.0283 (6)0.0225 (5)0.0527 (8)−0.0016 (5)0.0096 (6)0.0026 (6)
N10.0238 (6)0.0238 (6)0.0300 (9)−0.0034 (7)0.0020 (6)−0.0020 (6)
C10.0220 (7)0.0265 (8)0.0209 (7)−0.0006 (7)0.0003 (6)−0.0011 (6)
C20.0202 (7)0.0309 (9)0.0352 (8)−0.0030 (6)0.0014 (6)−0.0046 (7)
C30.0222 (7)0.0388 (9)0.0283 (8)0.0035 (7)−0.0034 (7)−0.0007 (7)
C40.0222 (8)0.0251 (7)0.0288 (8)0.0040 (6)0.0006 (6)0.0038 (6)
C50.0233 (8)0.0229 (8)0.0257 (7)0.0013 (6)0.0033 (7)0.0031 (6)
C60.0229 (7)0.0227 (7)0.0197 (7)0.0001 (6)0.0007 (6)0.0020 (6)
C70.0213 (6)0.0213 (6)0.0243 (10)−0.0026 (8)−0.0004 (6)0.0004 (6)
C80.0263 (8)0.0357 (9)0.0338 (9)0.0008 (7)0.0036 (7)−0.0065 (8)
C90.0353 (10)0.0389 (10)0.0631 (13)0.0080 (8)−0.0002 (9)0.0204 (10)
O1—C51.215 (2)C4—C91.528 (2)
N1—C11.3423 (18)C4—C81.542 (2)
N1—C1i1.3423 (18)C5—C61.496 (2)
C1—C61.409 (2)C6—C71.3861 (17)
C1—C21.502 (2)C7—C6i1.3861 (17)
C2—C31.529 (2)C7—H7A0.9500
C2—H2A0.9900C8—H8A0.9800
C2—H2B0.9900C8—H8B0.9800
C3—C41.534 (2)C8—H8C0.9800
C3—H3A0.9900C9—H9A0.9800
C3—H3B0.9900C9—H9B0.9800
C4—C51.525 (2)C9—H9C0.9800
C1—N1—C1i118.85 (19)O1—C5—C6120.07 (15)
N1—C1—C6122.40 (14)O1—C5—C4121.96 (15)
N1—C1—C2117.57 (14)C6—C5—C4117.93 (13)
C6—C1—C2120.01 (14)C7—C6—C1118.05 (15)
C1—C2—C3111.93 (14)C7—C6—C5119.24 (14)
C1—C2—H2A109.2C1—C6—C5122.71 (14)
C3—C2—H2A109.2C6i—C7—C6120.1 (2)
C1—C2—H2B109.2C6i—C7—H7A119.9
C3—C2—H2B109.2C6—C7—H7A119.9
H2A—C2—H2B107.9C4—C8—H8A109.5
C2—C3—C4114.27 (13)C4—C8—H8B109.5
C2—C3—H3A108.7H8A—C8—H8B109.5
C4—C3—H3A108.7C4—C8—H8C109.5
C2—C3—H3B108.7H8A—C8—H8C109.5
C4—C3—H3B108.7H8B—C8—H8C109.5
H3A—C3—H3B107.6C4—C9—H9A109.5
C5—C4—C9109.45 (15)C4—C9—H9B109.5
C5—C4—C3110.45 (13)H9A—C9—H9B109.5
C9—C4—C3109.74 (15)C4—C9—H9C109.5
C5—C4—C8105.29 (13)H9A—C9—H9C109.5
C9—C4—C8109.85 (16)H9B—C9—H9C109.5
C3—C4—C8111.95 (14)
C1i—N1—C1—C6−1.60 (11)C3—C4—C5—C629.2 (2)
C1i—N1—C1—C2176.83 (16)C8—C4—C5—C6−91.81 (16)
N1—C1—C2—C3154.89 (12)N1—C1—C6—C73.1 (2)
C6—C1—C2—C3−26.6 (2)C2—C1—C6—C7−175.25 (13)
C1—C2—C3—C451.52 (19)N1—C1—C6—C5−176.91 (12)
C2—C3—C4—C5−52.49 (18)C2—C1—C6—C54.7 (2)
C2—C3—C4—C9−173.25 (15)O1—C5—C6—C7−4.2 (2)
C2—C3—C4—C864.49 (18)C4—C5—C6—C7173.69 (12)
C9—C4—C5—O1−32.0 (2)O1—C5—C6—C1175.89 (15)
C3—C4—C5—O1−152.98 (16)C4—C5—C6—C1−6.3 (2)
C8—C4—C5—O185.99 (19)C1—C6—C7—C6i−1.48 (10)
C9—C4—C5—C6150.15 (17)C5—C6—C7—C6i178.57 (16)
D—H···AD—HH···AD···AD—H···A
C2—H2B···O1ii0.992.523.415 (2)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2B⋯O1i 0.992.523.415 (2)151

Symmetry code: (i) .

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