Literature DB >> 23476462

14-Eth-oxy-4,6-dimethyl-9-phenyl-8,12-dioxa-4,6-diaza-tetra-cyclo-[8.8.0.0(2,7).0(13,18)]octa-deca-2(7),13,15,17-tetra-ene-3,5,11-trione.

G Jagadeesan1, D Kannan, M Bakthadoss, S Aravindhan.   

Abstract

In the title compound, C23H20N2O6, the fused pyrone and pyran rings each adopt a sofa conformation. The dihedral angle between the mean planes of the pyran and phenyl rings is 61.9 (1)°. In the crystal, mol-ecules are linked by two pairs of C-H⋯O hydrogen bonds, forming dimers. These dimers are linked via a third C-H⋯O hydrogen bond, forming a two-dimensional network parallel to (10-2).

Entities:  

Year:  2012        PMID: 23476462      PMCID: PMC3588261          DOI: 10.1107/S160053681205009X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyran­ocoumarin compounds, see: Kawaii et al. (2001 ▶); Hossain et al. (1996 ▶); Goel et al. (1997 ▶); Su et al. (2009 ▶); Xu et al. (2006 ▶). For anti-filarial activity studies, see: Casley-Smith et al. (1993 ▶). For their enzyme inhibitory activity, see: Pavao et al. (2002 ▶). For asymmetry parameters, see: Nardelli (1983 ▶).

Experimental

Crystal data

C23H20N2O6 M = 420.41 Monoclinic, a = 16.8362 (9) Å b = 8.1692 (4) Å c = 14.4400 (8) Å β = 98.000 (3)° V = 1966.72 (18) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.25 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker 2004 ▶) T min = 0.979, T max = 0.983 19858 measured reflections 4247 independent reflections 2943 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.130 S = 1.04 4247 reflections 281 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681205009X/su2537sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681205009X/su2537Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681205009X/su2537Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H20N2O6F(000) = 880
Mr = 420.41Dx = 1.420 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8834 reflections
a = 16.8362 (9) Åθ = 2.1–31.2°
b = 8.1692 (4) ŵ = 0.10 mm1
c = 14.4400 (8) ÅT = 293 K
β = 98.000 (3)°Block, colourless
V = 1966.72 (18) Å30.25 × 0.20 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer4247 independent reflections
Radiation source: fine-focus sealed tube2943 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.039
ω and φ scanθmax = 26.9°, θmin = 1.2°
Absorption correction: multi-scan (SADABS; Bruker 2004)h = −21→21
Tmin = 0.979, Tmax = 0.983k = −10→10
19858 measured reflectionsl = −18→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.130w = 1/[σ2(Fo2) + (0.0545P)2 + 0.6922P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
4247 reflectionsΔρmax = 0.28 e Å3
281 parametersΔρmin = −0.19 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0027 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O40.16385 (8)0.54434 (17)0.34721 (9)0.0456 (4)
O20.22837 (7)0.36035 (17)0.07300 (9)0.0438 (3)
O30.12638 (8)0.20829 (18)0.09730 (10)0.0513 (4)
O60.41821 (8)0.2943 (2)0.41399 (10)0.0548 (4)
O50.29499 (10)0.5286 (2)0.64093 (10)0.0632 (4)
N10.23397 (10)0.5455 (2)0.49074 (11)0.0433 (4)
O10.29820 (9)0.5214 (2)−0.04780 (10)0.0547 (4)
N20.35919 (9)0.4205 (2)0.52645 (11)0.0450 (4)
C130.36037 (11)0.3696 (2)0.43419 (13)0.0412 (4)
C110.23195 (11)0.4981 (2)0.39956 (13)0.0379 (4)
C140.32631 (10)0.4522 (2)0.20279 (13)0.0369 (4)
C100.29172 (10)0.4137 (2)0.36840 (13)0.0367 (4)
C160.33429 (11)0.5327 (2)0.04229 (14)0.0427 (5)
C200.17880 (10)0.2965 (2)0.13077 (13)0.0387 (4)
C150.29621 (10)0.4502 (2)0.10910 (13)0.0378 (4)
C90.28330 (10)0.3522 (2)0.26942 (12)0.0365 (4)
H90.30450.24040.27070.044*
C80.19371 (10)0.3446 (2)0.23246 (13)0.0378 (4)
H80.16910.26180.26850.045*
C70.15484 (11)0.5103 (2)0.24763 (13)0.0386 (4)
H70.18210.59590.21640.046*
C10.06624 (11)0.5170 (2)0.21317 (14)0.0401 (4)
C120.29624 (12)0.4995 (3)0.55866 (14)0.0460 (5)
C220.16917 (14)0.6433 (3)0.52058 (15)0.0566 (6)
H22A0.18080.66470.58640.085*
H22C0.11960.58420.50790.085*
H22B0.16470.74500.48700.085*
C170.40429 (12)0.6166 (3)0.07246 (15)0.0515 (5)
H170.43130.67050.02940.062*
C190.39570 (11)0.5407 (3)0.23118 (15)0.0478 (5)
H190.41630.54590.29430.057*
C180.43425 (12)0.6208 (3)0.16645 (16)0.0555 (6)
H180.48110.67850.18630.067*
C60.04019 (13)0.5835 (3)0.12795 (15)0.0547 (6)
H60.07730.62740.09280.066*
C210.33837 (15)0.5946 (3)−0.11801 (15)0.0631 (6)
H21A0.30710.5791−0.17820.095*
H21B0.39000.5445−0.11740.095*
H21C0.34510.7096−0.10560.095*
C230.42923 (13)0.3828 (3)0.59566 (16)0.0614 (6)
H23A0.46900.32780.56540.092*
H23B0.41320.31330.64340.092*
H23C0.45130.48250.62340.092*
C20.01032 (13)0.4541 (3)0.26413 (19)0.0633 (7)
H20.02670.40960.32300.076*
C4−0.09540 (13)0.5224 (3)0.14226 (19)0.0647 (7)
H4−0.14960.52290.11810.078*
C5−0.04080 (15)0.5868 (3)0.09263 (18)0.0679 (7)
H5−0.05750.63370.03450.082*
C3−0.07031 (14)0.4565 (3)0.2283 (2)0.0738 (8)
H3−0.10770.41290.26310.089*
U11U22U33U12U13U23
O40.0445 (7)0.0561 (8)0.0357 (7)0.0139 (6)0.0034 (6)−0.0044 (6)
O20.0415 (7)0.0573 (8)0.0326 (7)−0.0085 (6)0.0054 (6)−0.0022 (6)
O30.0488 (8)0.0552 (8)0.0481 (9)−0.0117 (7)0.0006 (7)−0.0065 (7)
O60.0386 (7)0.0730 (10)0.0522 (9)0.0106 (7)0.0048 (6)0.0051 (8)
O50.0691 (10)0.0884 (12)0.0320 (8)−0.0072 (9)0.0067 (7)−0.0053 (8)
N10.0472 (9)0.0523 (10)0.0315 (9)0.0016 (7)0.0097 (7)−0.0019 (7)
O10.0533 (8)0.0768 (10)0.0347 (8)−0.0044 (7)0.0084 (6)0.0080 (7)
N20.0401 (9)0.0587 (10)0.0347 (9)−0.0063 (8)0.0003 (7)0.0046 (8)
C130.0382 (10)0.0483 (11)0.0371 (11)−0.0051 (9)0.0049 (8)0.0061 (9)
C110.0390 (9)0.0414 (10)0.0330 (10)−0.0023 (8)0.0034 (8)0.0026 (8)
C140.0316 (9)0.0449 (10)0.0352 (10)0.0033 (8)0.0079 (7)−0.0010 (8)
C100.0362 (9)0.0423 (10)0.0318 (10)−0.0009 (8)0.0056 (7)0.0034 (8)
C160.0411 (10)0.0526 (11)0.0354 (11)0.0044 (9)0.0088 (8)0.0028 (9)
C200.0347 (9)0.0411 (10)0.0400 (11)0.0022 (8)0.0042 (8)−0.0019 (8)
C150.0325 (9)0.0444 (10)0.0371 (11)0.0014 (8)0.0071 (8)−0.0011 (8)
C90.0326 (9)0.0421 (10)0.0350 (10)0.0026 (7)0.0054 (7)0.0005 (8)
C80.0351 (9)0.0427 (10)0.0363 (10)−0.0020 (8)0.0068 (7)0.0015 (8)
C70.0383 (9)0.0443 (10)0.0331 (10)0.0024 (8)0.0050 (8)0.0021 (8)
C10.0372 (10)0.0419 (10)0.0414 (11)0.0068 (8)0.0059 (8)−0.0018 (8)
C120.0503 (11)0.0537 (12)0.0335 (11)−0.0109 (9)0.0044 (9)0.0027 (9)
C220.0682 (14)0.0626 (14)0.0412 (12)0.0153 (11)0.0158 (10)−0.0050 (10)
C170.0449 (11)0.0635 (14)0.0485 (13)−0.0078 (10)0.0150 (9)0.0090 (10)
C190.0376 (10)0.0648 (13)0.0407 (11)−0.0063 (9)0.0049 (8)−0.0020 (10)
C180.0406 (11)0.0730 (15)0.0534 (14)−0.0165 (10)0.0087 (9)−0.0006 (11)
C60.0477 (11)0.0738 (15)0.0412 (12)0.0026 (11)0.0020 (9)0.0061 (11)
C210.0835 (17)0.0693 (15)0.0397 (13)−0.0016 (13)0.0199 (12)0.0094 (11)
C230.0477 (12)0.0874 (17)0.0450 (13)−0.0090 (12)−0.0078 (10)0.0099 (12)
C20.0467 (12)0.0761 (16)0.0682 (16)0.0043 (11)0.0122 (11)0.0215 (13)
C40.0387 (11)0.0757 (16)0.0765 (18)0.0069 (11)−0.0033 (12)−0.0295 (14)
C50.0590 (14)0.0907 (19)0.0489 (14)0.0113 (13)−0.0111 (11)−0.0079 (13)
C30.0445 (12)0.0807 (18)0.099 (2)−0.0016 (12)0.0204 (14)0.0022 (16)
O4—C111.337 (2)C7—C11.506 (2)
O4—C71.452 (2)C7—H70.9800
O2—C201.363 (2)C1—C61.361 (3)
O2—C151.396 (2)C1—C21.373 (3)
O3—C201.189 (2)C22—H22A0.9600
O6—C131.221 (2)C22—H22C0.9600
O5—C121.215 (2)C22—H22B0.9600
N1—C111.368 (2)C17—C181.381 (3)
N1—C121.384 (3)C17—H170.9300
N1—C221.465 (3)C19—C181.376 (3)
O1—C161.360 (2)C19—H190.9300
O1—C211.426 (2)C18—H180.9300
N2—C121.376 (3)C6—C51.388 (3)
N2—C131.398 (3)C6—H60.9300
N2—C231.468 (2)C21—H21A0.9600
C13—C101.436 (2)C21—H21B0.9600
C11—C101.348 (3)C21—H21C0.9600
C14—C151.377 (3)C23—H23A0.9600
C14—C191.386 (3)C23—H23B0.9600
C14—C91.520 (2)C23—H23C0.9600
C10—C91.503 (3)C2—C31.384 (3)
C16—C171.381 (3)C2—H20.9300
C16—C151.403 (3)C4—C51.349 (4)
C20—C81.507 (3)C4—C31.366 (4)
C9—C81.530 (2)C4—H40.9300
C9—H90.9800C5—H50.9300
C8—C71.533 (3)C3—H30.9300
C8—H80.9800
C11—O4—C7117.97 (14)C6—C1—C2118.38 (19)
C20—O2—C15120.75 (14)C6—C1—C7119.54 (18)
C11—N1—C12121.34 (17)C2—C1—C7122.06 (18)
C11—N1—C22121.18 (16)O5—C12—N2122.78 (19)
C12—N1—C22117.46 (17)O5—C12—N1121.7 (2)
C16—O1—C21117.29 (17)N2—C12—N1115.52 (17)
C12—N2—C13125.11 (16)N1—C22—H22A109.5
C12—N2—C23116.86 (17)N1—C22—H22C109.5
C13—N2—C23118.00 (17)H22A—C22—H22C109.5
O6—C13—N2119.66 (17)N1—C22—H22B109.5
O6—C13—C10124.30 (18)H22A—C22—H22B109.5
N2—C13—C10116.04 (17)H22C—C22—H22B109.5
O4—C11—C10125.25 (17)C18—C17—C16120.08 (19)
O4—C11—N1111.64 (16)C18—C17—H17120.0
C10—C11—N1123.11 (17)C16—C17—H17120.0
C15—C14—C19118.45 (18)C18—C19—C14120.33 (19)
C15—C14—C9118.22 (16)C18—C19—H19119.8
C19—C14—C9123.30 (17)C14—C19—H19119.8
C11—C10—C13118.49 (17)C19—C18—C17120.93 (19)
C11—C10—C9120.83 (16)C19—C18—H18119.5
C13—C10—C9120.39 (16)C17—C18—H18119.5
O1—C16—C17125.70 (18)C1—C6—C5121.1 (2)
O1—C16—C15116.05 (17)C1—C6—H6119.4
C17—C16—C15118.25 (18)C5—C6—H6119.4
O3—C20—O2117.79 (17)O1—C21—H21A109.5
O3—C20—C8124.59 (18)O1—C21—H21B109.5
O2—C20—C8117.62 (15)H21A—C21—H21B109.5
C14—C15—O2122.90 (16)O1—C21—H21C109.5
C14—C15—C16121.94 (17)H21A—C21—H21C109.5
O2—C15—C16115.09 (16)H21B—C21—H21C109.5
C10—C9—C14115.59 (15)N2—C23—H23A109.5
C10—C9—C8107.66 (14)N2—C23—H23B109.5
C14—C9—C8109.55 (14)H23A—C23—H23B109.5
C10—C9—H9107.9N2—C23—H23C109.5
C14—C9—H9107.9H23A—C23—H23C109.5
C8—C9—H9107.9H23B—C23—H23C109.5
C20—C8—C9111.91 (15)C1—C2—C3120.3 (2)
C20—C8—C7110.65 (15)C1—C2—H2119.8
C9—C8—C7109.51 (15)C3—C2—H2119.8
C20—C8—H8108.2C5—C4—C3119.3 (2)
C9—C8—H8108.2C5—C4—H4120.3
C7—C8—H8108.2C3—C4—H4120.3
O4—C7—C1106.40 (15)C4—C5—C6120.3 (2)
O4—C7—C8108.85 (14)C4—C5—H5119.9
C1—C7—C8114.07 (15)C6—C5—H5119.9
O4—C7—H7109.1C4—C3—C2120.6 (2)
C1—C7—H7109.1C4—C3—H3119.7
C8—C7—H7109.1C2—C3—H3119.7
D—H···AD—HH···AD···AD—H···A
C4—H4···O1i0.932.593.514 (3)172
C5—H5···O3i0.932.453.361 (3)165
C18—H18···O6ii0.932.563.215 (3)128
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4⋯O1i 0.932.593.514 (3)172
C5—H5⋯O3i 0.932.453.361 (3)165
C18—H18⋯O6ii 0.932.563.215 (3)128

Symmetry codes: (i) ; (ii) .

  8 in total

1.  Structure of Trypanosoma cruzi glycosomal glyceraldehyde-3-phosphate dehydrogenase complexed with chalepin, a natural product inhibitor, at 1.95 A resolution.

Authors:  F Pavão; M S Castilho; M T Pupo; R L A Dias; A G Correa; J B Fernandes; M F G F da Silva; J Mafezoli; P C Vieira; G Oliva
Journal:  FEBS Lett       Date:  2002-06-05       Impact factor: 4.124

2.  Pyranocoumarin, a novel anti-TB pharmacophore: synthesis and biological evaluation against Mycobacterium tuberculosis.

Authors:  Ze-Qi Xu; Krzysztof Pupek; William J Suling; Livia Enache; Michael T Flavin
Journal:  Bioorg Med Chem       Date:  2006-03-02       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Antiproliferative effect of isopentenylated coumarins on several cancer cell lines.

Authors:  S Kawaii; Y Tomono; K Ogawa; M Sugiura; M Yano; Y Yoshizawa; C Ito; H Furukawa
Journal:  Anticancer Res       Date:  2001 May-Jun       Impact factor: 2.480

5.  Antiulcer activity of naturally occurring pyrano-coumarin and isocoumarins and their effect on prostanoid synthesis using human colonic mucosa.

Authors:  R K Goel; R N Maiti; M Manickam; A B Ray
Journal:  Indian J Exp Biol       Date:  1997-10       Impact factor: 0.818

6.  Anti-HBV and cytotoxic activities of pyranocoumarin derivatives.

Authors:  Chung-Ren Su; Sheau Farn Yeh; Chih Miem Liu; Amooru G Damu; Tsung-Hsiao Kuo; Po-Cheng Chiang; Kenneth F Bastow; Kuo-Hsiung Lee; Tian-Shung Wu
Journal:  Bioorg Med Chem       Date:  2008-12-13       Impact factor: 3.641

7.  A new series of coumarin derivatives having monoamine oxidase inhibitory activity from Monascus anka.

Authors:  C F Hossain; E Okuyama; M Yamazaki
Journal:  Chem Pharm Bull (Tokyo)       Date:  1996-08       Impact factor: 1.645

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  1 in total

1.  14-Meth-oxy-4,6-dimethyl-9-phenyl-8,12-dioxa-4,6-di-aza-tetra-cyclo-[8.8.0.0(2,7).0(13,18)]octa-deca-2(7),13,15,17-tetra-ene-3,5,11-trione.

Authors:  G Jagadeesan; S Jayashree; D Kannan; M Bakthadoss; S Aravindhan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-03
  1 in total

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