Literature DB >> 23476442

2-[(E)-2-Hy-droxy-3-methoxy-benzyl-idene]-N-methyl-hydrazinecarbothio-amide.

B S Shankara1, N Shashidhar, Yogesh Prakash Patil, P Murali Krishna, Munirathinam Nethaji.   

Abstract

In the crystal structure of the title compound, C11H15N3O2S, mol-ecules are linked by pairs of N-H⋯O and O-H⋯S hydrogen, forming inversion dimers. These dimers are linked by N-H⋯S hydrogen bonds, forming double-stranded chains propagating along the b-axis direction. The two C atoms of the end chain of the mol-ecule are disordered over two sets os sites [occupancy ratio 0.574 (9):0.426 (9)].

Entities:  

Year:  2012        PMID: 23476442      PMCID: PMC3588310          DOI: 10.1107/S1600536812049847

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Joseph et al. (2006 ▶); Ren-Gao Zhao et al.(2008 ▶). For the biological activity of thio­semicarbazone Schiff bases, see: Kasuga et al. (2003 ▶); Murali et al. (2008 ▶, 2009 ▶); Paterson & Donnelly (2011 ▶).

Experimental

Crystal data

C11H15N3O2S M = 253.32 Monoclinic, a = 13.251 (6) Å b = 6.185 (3) Å c = 16.380 (8) Å β = 113.153 (7)° V = 1234.4 (11) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 293 K 0.26 × 0.09 × 0.05 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2006 ▶) T min = 0.936, T max = 0.987 7373 measured reflections 2433 independent reflections 1666 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.180 S = 1.06 2433 reflections 175 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.46 e Å−3 Δρmin = −0.37 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812049847/gw2126sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812049847/gw2126Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812049847/gw2126Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H15N3O2SF(000) = 536
Mr = 253.32Dx = 1.363 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1499 reflections
a = 13.251 (6) Åθ = 2.6–25.6°
b = 6.185 (3) ŵ = 0.26 mm1
c = 16.380 (8) ÅT = 293 K
β = 113.153 (7)°Rectangular plate like, yellow
V = 1234.4 (11) Å30.26 × 0.09 × 0.05 mm
Z = 4
Bruker APEXII CCD diffractometer2433 independent reflections
Radiation source: fine-focus sealed tube1666 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
Detector resolution: 0.3 pixels mm-1θmax = 26.0°, θmin = 1.7°
φ and ω scansh = −16→16
Absorption correction: multi-scan (SADABS; Bruker, 2006)k = −6→7
Tmin = 0.936, Tmax = 0.987l = −20→20
7373 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.180H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0756P)2 + 1.2001P] where P = (Fo2 + 2Fc2)/3
2433 reflections(Δ/σ)max < 0.001
175 parametersΔρmax = 0.46 e Å3
4 restraintsΔρmin = −0.37 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.87523 (8)0.71851 (17)0.56230 (8)0.0642 (4)
O10.37812 (19)0.2015 (4)0.55013 (16)0.0483 (6)
O20.28859 (18)−0.1250 (4)0.60039 (16)0.0515 (7)
N10.7027 (2)0.2534 (4)0.60644 (18)0.0419 (7)
N20.7343 (2)0.4427 (5)0.5791 (2)0.0462 (7)
C10.5554 (2)0.0466 (5)0.61505 (19)0.0355 (7)
C20.4438 (2)0.0358 (5)0.59547 (19)0.0356 (7)
C30.3996 (3)−0.1393 (5)0.6244 (2)0.0393 (7)
C40.4666 (3)−0.3038 (6)0.6715 (2)0.0457 (8)
C50.5792 (3)−0.2945 (6)0.6909 (2)0.0473 (8)
C60.6224 (3)−0.1240 (5)0.6625 (2)0.0420 (8)
H60.6972−0.12110.67480.050*
C70.2363 (3)−0.2905 (7)0.6292 (3)0.0617 (11)
H7A0.2530−0.42840.61070.093*
H7B0.1583−0.26800.60360.093*
H7C0.2621−0.28710.69270.093*
C80.5999 (3)0.2336 (5)0.5868 (2)0.0386 (7)
C90.8392 (3)0.4794 (6)0.5909 (2)0.0491 (9)
N30.9010 (4)0.2968 (11)0.6089 (5)0.0524 (17)*0.574 (9)
H30.87560.16780.59550.063*0.574 (9)
C101.0329 (6)0.3596 (12)0.6605 (6)0.076 (3)*0.574 (9)
H10A1.05520.46590.62730.092*0.574 (9)
H10B1.04910.41380.71990.092*0.574 (9)
C111.0867 (7)0.1453 (13)0.6627 (7)0.079 (3)*0.574 (9)
H11A1.07500.05280.70520.119*0.574 (9)
H11B1.16410.16610.67930.119*0.574 (9)
H11C1.05560.07970.60500.119*0.574 (9)
N3A0.9128 (5)0.3405 (12)0.6420 (6)0.043 (2)*0.426 (9)
H3A0.91090.28870.69010.051*0.426 (9)
C10A1.0095 (7)0.2744 (17)0.6053 (6)0.065 (3)*0.426 (9)
H10C0.98880.15370.56410.078*0.426 (9)
H10D1.03340.39590.57990.078*0.426 (9)
C11A1.0909 (11)0.213 (3)0.6964 (8)0.111 (5)*0.426 (9)
H11D1.08440.31110.73950.167*0.426 (9)
H11E1.16390.22070.69770.167*0.426 (9)
H11F1.07630.06840.71000.167*0.426 (9)
H10.309 (3)0.176 (6)0.535 (2)0.055 (11)*
H20.687 (3)0.534 (6)0.556 (2)0.048 (11)*
H40.435 (3)−0.420 (6)0.688 (2)0.050 (10)*
H50.634 (3)−0.414 (6)0.726 (2)0.060 (10)*
H80.553 (3)0.336 (5)0.557 (2)0.040 (9)*
U11U22U33U12U13U23
S10.0450 (6)0.0550 (6)0.0933 (8)−0.0108 (4)0.0280 (5)0.0119 (5)
O10.0348 (13)0.0452 (14)0.0638 (16)0.0000 (11)0.0181 (12)0.0143 (12)
O20.0413 (13)0.0519 (15)0.0639 (15)−0.0080 (11)0.0236 (12)0.0098 (12)
N10.0391 (15)0.0401 (15)0.0505 (16)−0.0012 (12)0.0217 (13)0.0044 (13)
N20.0349 (15)0.0393 (16)0.066 (2)0.0004 (13)0.0212 (14)0.0096 (15)
C10.0404 (17)0.0351 (17)0.0342 (16)−0.0023 (13)0.0181 (14)−0.0020 (13)
C20.0396 (17)0.0325 (16)0.0359 (16)0.0003 (13)0.0160 (14)0.0013 (13)
C30.0423 (18)0.0400 (18)0.0408 (17)−0.0068 (15)0.0218 (15)−0.0035 (15)
C40.057 (2)0.0352 (18)0.051 (2)−0.0042 (16)0.0276 (18)0.0058 (15)
C50.053 (2)0.0410 (19)0.051 (2)0.0068 (16)0.0245 (17)0.0094 (16)
C60.0388 (17)0.0431 (18)0.0468 (19)0.0040 (15)0.0197 (15)0.0012 (15)
C70.055 (2)0.063 (3)0.075 (3)−0.0192 (19)0.035 (2)0.004 (2)
C80.0355 (17)0.0373 (17)0.0426 (18)−0.0004 (15)0.0151 (14)0.0042 (15)
C90.0367 (18)0.051 (2)0.059 (2)−0.0024 (16)0.0194 (16)0.0060 (17)
S1—C91.676 (4)C7—H7C0.9600
O1—C21.360 (4)C8—H80.89 (3)
O1—H10.87 (4)C9—N3A1.322 (8)
O2—C31.367 (4)C9—N31.358 (7)
O2—C71.416 (4)N3—C101.661 (8)
N1—C81.277 (4)N3—H30.8600
N1—N21.376 (4)C10—C111.499 (7)
N2—C91.346 (4)C10—H10A0.9700
N2—H20.82 (3)C10—H10B0.9700
C1—C21.387 (4)C11—H11A0.9600
C1—C61.401 (4)C11—H11B0.9600
C1—C81.454 (4)C11—H11C0.9600
C2—C31.399 (4)N3A—C10A1.667 (8)
C3—C41.371 (5)N3A—H3A0.8600
C4—C51.399 (5)C10A—C11A1.506 (7)
C4—H40.93 (4)C10A—H10C0.9700
C5—C61.366 (5)C10A—H10D0.9700
C5—H51.04 (4)C11A—H11D0.9600
C6—H60.9300C11A—H11E0.9600
C7—H7A0.9600C11A—H11F0.9600
C7—H7B0.9600
C2—O1—H1113 (3)N1—C8—H8121 (2)
C3—O2—C7118.0 (3)C1—C8—H8118 (2)
C8—N1—N2115.5 (3)N3A—C9—N2116.4 (4)
C9—N2—N1121.7 (3)N2—C9—N3113.1 (4)
C9—N2—H2120 (2)N3A—C9—S1122.0 (4)
N1—N2—H2118 (2)N2—C9—S1120.0 (3)
C2—C1—C6118.5 (3)N3—C9—S1125.5 (3)
C2—C1—C8119.6 (3)C9—N3—C10109.9 (5)
C6—C1—C8121.9 (3)C9—N3—H3125.1
O1—C2—C1119.0 (3)C10—N3—H3125.1
O1—C2—C3120.3 (3)C11—C10—N3101.6 (6)
C1—C2—C3120.6 (3)C11—C10—H10A111.4
O2—C3—C4126.5 (3)N3—C10—H10A111.4
O2—C3—C2113.5 (3)C11—C10—H10B111.4
C4—C3—C2120.0 (3)N3—C10—H10B111.4
C3—C4—C5119.6 (3)H10A—C10—H10B109.3
C3—C4—H4118 (2)C9—N3A—C10A114.2 (6)
C5—C4—H4122 (2)C9—N3A—H3A122.9
C6—C5—C4120.4 (3)C10A—N3A—H3A122.9
C6—C5—H5116 (2)C11A—C10A—N3A93.3 (9)
C4—C5—H5123 (2)C11A—C10A—H10C113.1
C5—C6—C1120.7 (3)N3A—C10A—H10C113.1
C5—C6—H6119.6C11A—C10A—H10D113.1
C1—C6—H6119.6N3A—C10A—H10D113.1
O2—C7—H7A109.5H10C—C10A—H10D110.4
O2—C7—H7B109.5C10A—C11A—H11D109.5
H7A—C7—H7B109.5C10A—C11A—H11E109.5
O2—C7—H7C109.5H11D—C11A—H11E109.5
H7A—C7—H7C109.5C10A—C11A—H11F109.5
H7B—C7—H7C109.5H11D—C11A—H11F109.5
N1—C8—C1121.5 (3)H11E—C11A—H11F109.5
C8—N1—N2—C9−176.1 (3)C8—C1—C6—C5177.8 (3)
C6—C1—C2—O1179.4 (3)N2—N1—C8—C1−177.1 (3)
C8—C1—C2—O1−0.1 (4)C2—C1—C8—N1177.3 (3)
C6—C1—C2—C31.5 (4)C6—C1—C8—N1−2.2 (5)
C8—C1—C2—C3−178.0 (3)N1—N2—C9—N3A−10.2 (6)
C7—O2—C3—C42.6 (5)N1—N2—C9—N316.6 (6)
C7—O2—C3—C2−177.8 (3)N1—N2—C9—S1−176.2 (3)
O1—C2—C3—O21.6 (4)N3A—C9—N3—C10−54.4 (10)
C1—C2—C3—O2179.5 (3)N2—C9—N3—C10−157.7 (5)
O1—C2—C3—C4−178.8 (3)S1—C9—N3—C1035.9 (8)
C1—C2—C3—C4−0.9 (5)C9—N3—C10—C11−172.4 (6)
O2—C3—C4—C5−180.0 (3)N2—C9—N3A—C10A139.6 (6)
C2—C3—C4—C50.5 (5)N3—C9—N3A—C10A51.5 (9)
C3—C4—C5—C6−0.7 (5)S1—C9—N3A—C10A−54.8 (9)
C4—C5—C6—C11.3 (5)C9—N3A—C10A—C11A155.8 (9)
C2—C1—C6—C5−1.7 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1···S1i0.87 (4)2.42 (4)3.169 (3)145 (3)
N2—H2···O1i0.82 (3)2.29 (4)3.010 (4)147 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯S1i 0.87 (4)2.42 (4)3.169 (3)145 (3)
N2—H2⋯O1i 0.82 (3)2.29 (4)3.010 (4)147 (3)

Symmetry code: (i) .

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