Literature DB >> 21202624

(E)-2-Hydr-oxy-3-methoxy-benzaldehyde thio-semicarbazone.

Ren-Gao Zhao, Wei Zhang, Ji-Kun Li, Li-Ya Zhang.   

Abstract

In the title compound, C(9)H(11)N(3)O(2)S, intra-molecular O-H⋯O and N-H⋯N hydrogen bonds contribute to the planarity of the mol-ecular skeleton. Inter-molecular N-H⋯O hydrogen bonds link the mol-ecules into zigzag chains along the b axis; these mol-ecules are futher paired by π-π inter-actions [centroid-centroid distance 4.495 (5) Å]. The crystal structure also exhibits weak inter-molecular N-H⋯S and O-H⋯S hydrogen bonds.

Entities:  

Year:  2008        PMID: 21202624      PMCID: PMC2961450          DOI: 10.1107/S1600536808014475

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related crystal structures, see: Joseph et al. (2006 ▶). For biological activities of thio­semicarbazone Schiff bases, see: Kasuga et al. (2001 ▶); Fonari et al. (2003 ▶).

Experimental

Crystal data

C9H11N3O2S M = 225.27 Monoclinic, a = 7.057 (3) Å b = 14.673 (5) Å c = 10.738 (4) Å β = 108.412 (7)° V = 1055.0 (7) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 273 (2) K 0.15 × 0.12 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.958, T max = 0.972 5510 measured reflections 1872 independent reflections 1023 reflections with I > 2σ(I) R int = 0.071

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.163 S = 1.10 1872 reflections 138 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808014475/cv2411sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808014475/cv2411Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11N3O2SF(000) = 472
Mr = 225.27Dx = 1.418 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 511 reflections
a = 7.057 (3) Åθ = 2.4–19.8°
b = 14.673 (5) ŵ = 0.29 mm1
c = 10.738 (4) ÅT = 273 K
β = 108.412 (7)°Block, orange
V = 1055.0 (7) Å30.15 × 0.12 × 0.10 mm
Z = 4
Bruker SMART CCD area-detector diffractometer1872 independent reflections
Radiation source: fine-focus sealed tube1023 reflections with I > 2σ(I)
graphiteRint = 0.071
φ and ω scansθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→6
Tmin = 0.958, Tmax = 0.972k = −17→17
5510 measured reflectionsl = −9→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.060H-atom parameters constrained
wR(F2) = 0.163w = 1/[σ2(Fo2) + (0.0641P)2 + 0.0089P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
1872 reflectionsΔρmax = 0.19 e Å3
138 parametersΔρmin = −0.28 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.005 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S11.0171 (2)0.35387 (8)0.55909 (10)0.0534 (5)
O10.8111 (5)0.65121 (18)−0.0190 (3)0.0600 (10)
H10.79150.6940−0.07060.090*
O20.6495 (5)0.6610 (2)−0.2733 (3)0.0637 (10)
N10.8421 (5)0.4185 (2)0.1879 (3)0.0423 (10)
N20.9111 (5)0.4247 (2)0.3218 (3)0.0464 (10)
H20.93510.47710.35950.056*
N30.9079 (6)0.2710 (2)0.3278 (3)0.0583 (12)
H3A0.86920.27160.24340.070*
H3B0.92480.21990.36920.070*
C10.9411 (7)0.3481 (3)0.3936 (4)0.0425 (11)
C20.8215 (7)0.4935 (3)0.1257 (4)0.0442 (12)
H2A0.85800.54800.17120.053*
C30.7403 (6)0.4938 (3)−0.0173 (4)0.0383 (11)
C40.7340 (7)0.5738 (3)−0.0851 (4)0.0410 (11)
C50.6465 (7)0.5770 (3)−0.2212 (4)0.0443 (12)
C60.5703 (8)0.4995 (3)−0.2877 (4)0.0556 (14)
H60.51230.5011−0.37840.067*
C70.5789 (8)0.4183 (3)−0.2207 (4)0.0625 (15)
H70.52750.3655−0.26690.075*
C80.6621 (7)0.4148 (3)−0.0874 (4)0.0552 (14)
H80.66670.3599−0.04340.066*
C90.5673 (8)0.6720 (3)−0.4120 (4)0.0628 (15)
H9A0.63350.6316−0.45510.094*
H9B0.58590.7339−0.43510.094*
H9C0.42720.6582−0.43920.094*
U11U22U33U12U13U23
S10.0790 (10)0.0454 (7)0.0340 (6)0.0035 (7)0.0154 (6)0.0006 (5)
O10.100 (3)0.0310 (16)0.0406 (17)−0.0114 (18)0.0107 (17)−0.0004 (14)
O20.092 (3)0.054 (2)0.0415 (19)−0.0039 (19)0.0147 (17)0.0101 (15)
N10.055 (3)0.041 (2)0.0303 (19)0.0000 (18)0.0133 (17)−0.0019 (16)
N20.068 (3)0.038 (2)0.032 (2)0.000 (2)0.0133 (18)−0.0004 (16)
N30.098 (4)0.039 (2)0.032 (2)−0.001 (2)0.012 (2)0.0005 (16)
C10.053 (3)0.037 (2)0.036 (2)0.003 (2)0.012 (2)0.005 (2)
C20.056 (4)0.035 (2)0.042 (2)0.000 (2)0.016 (2)0.0029 (19)
C30.046 (3)0.036 (3)0.032 (2)0.004 (2)0.011 (2)0.0028 (18)
C40.043 (3)0.038 (3)0.040 (2)0.003 (2)0.012 (2)−0.001 (2)
C50.056 (3)0.042 (3)0.035 (2)0.001 (2)0.014 (2)0.008 (2)
C60.069 (4)0.061 (3)0.033 (3)−0.004 (3)0.010 (2)−0.006 (2)
C70.087 (4)0.045 (3)0.049 (3)−0.006 (3)0.013 (3)−0.011 (2)
C80.074 (4)0.043 (3)0.045 (3)−0.003 (3)0.013 (2)−0.001 (2)
C90.063 (4)0.074 (3)0.047 (3)0.004 (3)0.011 (2)0.017 (2)
S1—C11.688 (4)C2—H2A0.9300
O1—C41.358 (4)C3—C41.375 (5)
O1—H10.8200C3—C81.396 (5)
O2—C51.357 (5)C4—C51.397 (5)
O2—C91.426 (5)C5—C61.360 (6)
N1—C21.271 (5)C6—C71.382 (6)
N1—N21.367 (4)C6—H60.9300
N2—C11.342 (5)C7—C81.365 (6)
N2—H20.8600C7—H70.9300
N3—C11.315 (5)C8—H80.9300
N3—H3A0.8600C9—H9A0.9600
N3—H3B0.8600C9—H9B0.9600
C2—C31.460 (5)C9—H9C0.9600
C1···C9i3.425 (7)C2···C4i3.445 (7)
C4—O1—H1109.5C3—C4—C5120.8 (4)
C5—O2—C9118.7 (3)O2—C5—C6126.7 (4)
C2—N1—N2116.0 (3)O2—C5—C4113.7 (4)
C1—N2—N1119.2 (3)C6—C5—C4119.5 (4)
C1—N2—H2120.4C5—C6—C7120.1 (4)
N1—N2—H2120.4C5—C6—H6119.9
C1—N3—H3A120.0C7—C6—H6119.9
C1—N3—H3B120.0C8—C7—C6120.8 (4)
H3A—N3—H3B120.0C8—C7—H7119.6
N3—C1—N2116.3 (4)C6—C7—H7119.6
N3—C1—S1123.5 (3)C7—C8—C3120.0 (4)
N2—C1—S1120.2 (3)C7—C8—H8120.0
N1—C2—C3119.8 (4)C3—C8—H8120.0
N1—C2—H2A120.1O2—C9—H9A109.5
C3—C2—H2A120.1O2—C9—H9B109.5
C4—C3—C8118.8 (4)H9A—C9—H9B109.5
C4—C3—C2119.7 (4)O2—C9—H9C109.5
C8—C3—C2121.4 (4)H9A—C9—H9C109.5
O1—C4—C3119.8 (4)H9B—C9—H9C109.5
O1—C4—C5119.4 (4)
C2—N1—N2—C1−178.4 (4)C9—O2—C5—C4178.9 (4)
N1—N2—C1—N32.5 (6)O1—C4—C5—O20.0 (7)
N1—N2—C1—S1−177.5 (3)C3—C4—C5—O2179.1 (4)
N2—N1—C2—C3−177.3 (4)O1—C4—C5—C6179.6 (4)
N1—C2—C3—C4−174.4 (4)C3—C4—C5—C6−1.3 (7)
N1—C2—C3—C87.7 (7)O2—C5—C6—C7179.7 (5)
C8—C3—C4—O1−179.3 (4)C4—C5—C6—C70.2 (8)
C2—C3—C4—O12.8 (7)C5—C6—C7—C80.5 (9)
C8—C3—C4—C51.7 (7)C6—C7—C8—C3−0.2 (8)
C2—C3—C4—C5−176.3 (4)C4—C3—C8—C7−0.9 (7)
C9—O2—C5—C6−0.6 (7)C2—C3—C8—C7177.0 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1···O20.822.142.610 (4)116.
N3—H3A···N10.862.232.592 (5)105.
O1—H1···S1ii0.822.693.290 (3)131.
N2—H2···S1iii0.862.623.470 (4)172.
N3—H3B···O1iv0.862.282.943 (4)134.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O20.822.142.610 (4)116
N3—H3A⋯N10.862.232.592 (5)105
O1—H1⋯S1ii0.822.693.290 (3)131
N2—H2⋯S1iii0.862.623.470 (4)172
N3—H3B⋯O1iv0.862.282.943 (4)134

Symmetry codes: (ii) ; (iii) ; (iv) .

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